Gene detail

Detailed information of ENSQPTP00000062963.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031552397.1, WD repeat-containing protein 88-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000074089

ATTCCAAGTTCCAAAATTCCAATTCCTATTTTTCCATCCTTGACTACCAGTCCCTCACGGTGTTTACCCATAGTCCTTTTCGTGCTGtgtttcaagatggcggacgaggTTGACTTGACGATGAGTTGTAAACAAACTTTAtcaaatgtttcttctttctaGTTTGAACGagaaaaattggaaaataggaaaaactTAAATTTCGAACATATAACCATGGGTATTAGagataaaaagaataaaaatgcTAATCAAAACGATTCAAACGGAGCGACTTGGGTCCATCAGTCCCTCGCACAGGTCAAGATCAAGGTGATGAAAGGTCATGCTGATGATGTCAATTCCTGTGAATTCTGTTTTGATGACTCCAAGATCGTTACGTCATCCAATGATATGACAATCAAGTTATGGGACACAGTGACTGGAAACCAGCTAAAAACATATAACGGCCATTCATCTTTCATAACAAGTTGTTGCCCAGATTCAGAAAATAGAACgcTGGCATCAGGAGGATGGGACAAAAATCTGATTGTATGGGTGGCAGAGACAGGACAGATTTTGTGGAAAGCTGTTCATGAAGGAATCATCACTAGTTGTCATTTTTCCAGCGATGGGAAGTACCTAGTGACTGGAACTGACTTGGATTTTGCTATCTGTATATGGGATGCAAGGGAAGGCACTTTGATCAAGAAACTCATAAATCACAAGAGTACAGTAACGTGTTGTCGCTTTTCACCTTTTGAGAACCGTATTTGCTCCACATCAATGGACAAGACAACTAAAATTACCGATATGCGCACATTTAAGACCAGCAACAGTAACATCACTTTACAACTTGGgGGACACATAAATGTGATTTCGTCATGCTGTTTTTCAAGTGATGAACACCTACTGGCAACAGGATCGTGGGACAAAAATATCCAGCTTTGGGACGTGGCCACAGGGGTCTACAGAACCCAGGGACCAATGACCCTATCAAAGGGCCATGAGGGGTCTATCAGTGCTTGTCAATTCAGCAAGGATGggAAAACTTTGGTGTCATCATCATACGACGAGACCCTTGTCATTTGGGATGTGGATAACCTATGTCAAAAGTTTGCATTAAAAGGTCATTCAGGATGGGTGAATGATTGCAGCATCAGTCAAGACCAGAAATGGGTATTATCATGCTCAAAGGATAAGACAGTTCGACTGTGGAACATAGAGTCTAGTGATGATATACCAGTGGTTCTTGAACACAGGAAAAATATTGGACTGCGCATCGTGCAATGCCAGAGTTGCAGCAAGCCATTTTCTATTGCACAGCTAGAAGAAGCAGACAACAATAAGTTCTGTGTATTTTGTCGTCTGGAGCACCCTTCCATGTACGAACCACCAGTTACTTAATAATATTTGACTAACAGACACAAAGTCTTGTTGCCCAAACAGTTGCGATCCTTCAAGAGATTATAAGAATAAAGCTTGCAATCTACTAGCTATACATTCAATAGTCCTTTGTAGTACTAGTCTATTACGAAAGATGAGAATAAATATATGGGGTGCCTGTTCCCCTTCGACTACCTGTCGACACACCCCTATGAGAAATTACTTACTAATAGGTTATATCAAGGGTTATCAATAGACCCATTAAGCTTGCATGTGTGTAATGCTTTCCTATTTCAAACTTGATGCCattctttgttttccattAATAAGATGCACCATGAATGttactcaaacaaaaaatgccCTATTCCTAAAGGGATGATGTGCACGTCTAAAATAGGAAAACACTTTGCTCAAACTTTAAAGATCTAATATTATTAAGCATTTCCAGTAACACTATTAACAATTTATGTAcaaatgatattttaatatgGAATCAGTCTTTGTATTTACATGATTGTACTTATTCCTATGAGTTTACAAATTAAAAGGAATTTTAACATTATACTttataattatcataattattatttaatatttttaccttttaaTTAAGACACATTTTTACTGTTATGAAATGACTGATGGAAAAAGTTCCTGACATGTAAAGCACTTGATTTGCCAATAATAGGAGACATTTCCTGTAATAAATACAAGCAAAGAAGAAATTCAGATATATTTATTGACATACAAGTACAGTGATTTTGCTCTACTGAAAGCATGCAGTATGCCCTGAAGTatcctctgggctaatctacaTACATTAGGCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMY6	WD repeat-containing protein 88 OS=Homo sapiens OX=9606 GN=WDR88 PE=1 SV=2
Q5RDY7	Guanine nucleotide-binding protein subunit beta-5 OS=Pongo abelii OX=9601 GN=GNB5 PE=2 SV=1
Q6PNB6	Guanine nucleotide-binding protein subunit beta-5 OS=Oryctolagus cuniculus OX=9986 GN=GNB5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006116 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45048 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24757	WDR88; WD repeat-containing protein 88	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.