Gene detail

Detailed information of ENSQPTP00000064382.1 in Actinia mediterranea

Genomic Location: chr3:7471593...7477661
NR annotation: XP_031571800.1, uncharacterized protein LOC116305938 isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSQPTT00000075619

ATGGAAATGGAAAGTGATCCTTTTCCGTCCTTTAACCATCCATTTTATCCCGATGGTGGGCACCAGCAAACTTTTATTGACTACGGAAGTGTATCAACACTTAACATCgatattgataatgatggACGTGTAGTGACGACCTCTAAGCATCGACACTATGATAAAGAAAGTGATGGTACTCGTCTTGTTGAAGCTCATCTTACTCTTCCTCTTTTTGCACCTTGTAAAAATGTATTCACCGACAAGGTCTTTCCCGAGCAGCGTTGTCGTATTCATAACTCAAACTTTAAACAGAGCCTTCTGGAACAGACTAGTGATTTCTACAAAAATCATCCAGATATTGCTTTTCAATCTAGTGTTGAGTTCGTTGGAGAAGAACTACATTGCAAGCCTTGGGATCCAAAATGTTTCTATTATTCGAAAACAATACAAATGGTTCACATGACGAAAAGACAGCACTTAAACCCGAACAATTTTCTGGACAGATTCTGTGATTTATTCGTCACTTTTCCTCTTAGTAAAGATTTGGGTCTGATGCTGGACAAAAGGTATGCTTTGCCCAGGGGGCTTTGCGAAGCATTCCATGATATTCCACCACGACTACTCTTTGACCTTTTAAATGAGAGCGTAGAACAAcggaaaaatgaaaagttatattttgatattttacaaGGGAATACTTTAGCCTATTGTAATATGCCTGATAGTGAATCAGGACAAAATATAGTTCTGTTATACCCTAGTGGGCCATGTTTAGAAGTGTTAAATTCAAGTATAGTAAGGCTTAAAGATACTGGAACTTTATCAGATAAATCAAGAAAACTATACAGAAAGCCTGCTTTATTAACTTGTAGTAAAAATGAGGATGGTAAAGGAACAATACGACAGATATCTGCAGTATCTTATGAACATGGCAACACTTTTGTGGCAACAAGAAGCCAATATGGTTGCACATTCTTCAGTGCAACCATTTCTACCACAAAGGACAGTCCTGAGATCACTTTAAAGGCCATAGACAATCTAGTCAAAGAAGATCAAGCTATGAGCTTAGCTCTAAGTCCCTATATCCCAGGTGAAGGTgttgttgccatggaaactgGACAGGTCTATATTTGGCACCTTGGTAAGCAAGTCGAAACAAGAGATGTTCCAACGGTGGCTCCAAAGGAAAATTGGCCTTGGTACCAATGTGTATATGCTTCTCATCCAAGATGTATATTGATTGCTAATTCAGTAGAGGCTGATATTATGGACTTAAGGGCAAGTGGCTCCTTCTCAAGAAACCTATTTTCAGTGACTTCCAAACAAGTAAGCACACTGGAACGGATATCAGCAATTCAACGAAATCCTGAAAATACTCACCACTATGTCATAGCAACAGACCAGTCACTTCTGATCATGGATGATAGGTTCATACAACACCCAGTCCTAAAATGGCGGCACCACCTCCAAGACCCAGTACAGTATATTGAGGTTATAAATAGTGCAGTACCAAGAGACACGGTTATCACAGTTTCAGGGTCGCAGCATCATGAGACTCATTGTTTTCAGTATAACTGGGGAGAATGTGATGTCAGGTATACCTTTCCATATGGTGGTGAAAATCTGGTGAATCCTCCAGTGTCAACAGTGCTACCCTGGAAGGTATCTTCTTATGATGAATGGCCATCACATGTTCCTACGTCAATTCTCCCAATCTCTTCACTTTTAGATGATCGTTTATCTCAACCACTCATTGGTGTTTGTTGCATACCATTGAGCTCCAAAGAAGACAGGAAAGGATTTACAGCCTTTCAAATGTCTTCAGCTGGTGACCTATTTTATCAGCCATTTATTCAAAATGACAAAGGCAAAGGCAGAATCTATCGATATGATCCAAGTACTAGTAAAGATTCCAAGAATGTAAGATTTTCAGATGCAGATATTACCTTTTTAAAGAGCTGGATTGACGAACTTGTGGCAATGgccaatgaaaatgatgaatACAATGAATGGCCATTGAGGTCCAACATGTCGGAGACAGATTGTGAAGATTTGTTTAGGAAGATGATGTATCTTGAGCTACCACATCAGTCATGTTTTCTTTGCAATCCTTCTACAGCCAATAGTTATGCCACTgtacaagaagaacaagacaaTGATGAAGAGTGTGTATGTCCTCGCTGTGAAATTGATGTCAAGAATGGAAGGCAGGTGAAGAAATGTCAAACACTGAACATTCAATGCagggaaaaaattaaatcagAAGTTCAATGTGCAGATCTAAATTTTGTAAATAACGCTGACAGTTATAAAGACCCTTTGAGCcaaaatttatttcaaaactgGTTTTCTGACACACATGTACCCTTGAATCTGGGAAGTACAGATAAGatagataaagaaaaagaagtgcCTACCATCGCCTCTAATGTTAAtgtcaaaaatgaaaacaagaatGAAAAGCAAGCTACTAAAGAAACCAGTACAGGAGAAAGTTCGCAGTTGAACAATGAAGTATTAgcacaaaaaatatttgaatcaGTTGAAGAACAAAGTTTCGATTTACCAATGAAGGAATTATCAGAACCTTCAACTGTGACACCACTTAAATGTTCAGAGCCAATTCAGAGTCCTTTGAAAGTGGGAAATGTTTCACCTCGCAAGCAAGttaaaagaattaaaagacTTAATCAGTCCATGGGCTTTTGA

Transcript

ENSQPTT00000075619

GTCAAGATGGCGGGCGAATGATCACATGGAAATGGAAAGTGATCCTTTTCCGTCCTTTAACCATCCATTTTATCCCGATGGTGGGCACCAGCAAACTTTTATTGACTACGGAAGTGTATCAACACTTAACATCgatattgataatgatggACGTGTAGTGACGACCTCTAAGCATCGACACTATGATAAAGAAAGTGATGGTACTCGTCTTGTTGAAGCTCATCTTACTCTTCCTCTTTTTGCACCTTGTAAAAATGTATTCACCGACAAGGTCTTTCCCGAGCAGCGTTGTCGTATTCATAACTCAAACTTTAAACAGAGCCTTCTGGAACAGACTAGTGATTTCTACAAAAATCATCCAGATATTGCTTTTCAATCTAGTGTTGAGTTCGTTGGAGAAGAACTACATTGCAAGCCTTGGGATCCAAAATGTTTCTATTATTCGAAAACAATACAAATGGTTCACATGACGAAAAGACAGCACTTAAACCCGAACAATTTTCTGGACAGATTCTGTGATTTATTCGTCACTTTTCCTCTTAGTAAAGATTTGGGTCTGATGCTGGACAAAAGGTATGCTTTGCCCAGGGGGCTTTGCGAAGCATTCCATGATATTCCACCACGACTACTCTTTGACCTTTTAAATGAGAGCGTAGAACAAcggaaaaatgaaaagttatattttgatattttacaaGGGAATACTTTAGCCTATTGTAATATGCCTGATAGTGAATCAGGACAAAATATAGTTCTGTTATACCCTAGTGGGCCATGTTTAGAAGTGTTAAATTCAAGTATAGTAAGGCTTAAAGATACTGGAACTTTATCAGATAAATCAAGAAAACTATACAGAAAGCCTGCTTTATTAACTTGTAGTAAAAATGAGGATGGTAAAGGAACAATACGACAGATATCTGCAGTATCTTATGAACATGGCAACACTTTTGTGGCAACAAGAAGCCAATATGGTTGCACATTCTTCAGTGCAACCATTTCTACCACAAAGGACAGTCCTGAGATCACTTTAAAGGCCATAGACAATCTAGTCAAAGAAGATCAAGCTATGAGCTTAGCTCTAAGTCCCTATATCCCAGGTGAAGGTgttgttgccatggaaactgGACAGGTCTATATTTGGCACCTTGGTAAGCAAGTCGAAACAAGAGATGTTCCAACGGTGGCTCCAAAGGAAAATTGGCCTTGGTACCAATGTGTATATGCTTCTCATCCAAGATGTATATTGATTGCTAATTCAGTAGAGGCTGATATTATGGACTTAAGGGCAAGTGGCTCCTTCTCAAGAAACCTATTTTCAGTGACTTCCAAACAAGTAAGCACACTGGAACGGATATCAGCAATTCAACGAAATCCTGAAAATACTCACCACTATGTCATAGCAACAGACCAGTCACTTCTGATCATGGATGATAGGTTCATACAACACCCAGTCCTAAAATGGCGGCACCACCTCCAAGACCCAGTACAGTATATTGAGGTTATAAATAGTGCAGTACCAAGAGACACGGTTATCACAGTTTCAGGGTCGCAGCATCATGAGACTCATTGTTTTCAGTATAACTGGGGAGAATGTGATGTCAGGTATACCTTTCCATATGGTGGTGAAAATCTGGTGAATCCTCCAGTGTCAACAGTGCTACCCTGGAAGGTATCTTCTTATGATGAATGGCCATCACATGTTCCTACGTCAATTCTCCCAATCTCTTCACTTTTAGATGATCGTTTATCTCAACCACTCATTGGTGTTTGTTGCATACCATTGAGCTCCAAAGAAGACAGGAAAGGATTTACAGCCTTTCAAATGTCTTCAGCTGGTGACCTATTTTATCAGCCATTTATTCAAAATGACAAAGGCAAAGGCAGAATCTATCGATATGATCCAAGTACTAGTAAAGATTCCAAGAATGTAAGATTTTCAGATGCAGATATTACCTTTTTAAAGAGCTGGATTGACGAACTTGTGGCAATGgccaatgaaaatgatgaatACAATGAATGGCCATTGAGGTCCAACATGTCGGAGACAGATTGTGAAGATTTGTTTAGGAAGATGATGTATCTTGAGCTACCACATCAGTCATGTTTTCTTTGCAATCCTTCTACAGCCAATAGTTATGCCACTgtacaagaagaacaagacaaTGATGAAGAGTGTGTATGTCCTCGCTGTGAAATTGATGTCAAGAATGGAAGGCAGGTGAAGAAATGTCAAACACTGAACATTCAATGCagggaaaaaattaaatcagAAGTTCAATGTGCAGATCTAAATTTTGTAAATAACGCTGACAGTTATAAAGACCCTTTGAGCcaaaatttatttcaaaactgGTTTTCTGACACACATGTACCCTTGAATCTGGGAAGTACAGATAAGatagataaagaaaaagaagtgcCTACCATCGCCTCTAATGTTAAtgtcaaaaatgaaaacaagaatGAAAAGCAAGCTACTAAAGAAACCAGTACAGGAGAAAGTTCGCAGTTGAACAATGAAGTATTAgcacaaaaaatatttgaatcaGTTGAAGAACAAAGTTTCGATTTACCAATGAAGGAATTATCAGAACCTTCAACTGTGACACCACTTAAATGTTCAGAGCCAATTCAGAGTCCTTTGAAAGTGGGAAATGTTTCACCTCGCAAGCAAGttaaaagaattaaaagacTTAATCAGTCCATGGGCTTTTGAAGTAcaggaaatttcaaaacaggaTTTTATGATAAGCCATTTTTAAATTAGTACTAACGGTTGTGTTCCTTGGTAacagactcatttatttaGAGTCAACCTTATTTCAGAGTCAGAATAGTCACAAATACTGACTGTAAAGTAAAGAAACTGTTATGTCTTGAAAGGAACACTCATTCAGAATAGGTTTTTACAAGAAGACAAACTGTCCCTCAAAGTTCATCAAAGCAAACGTGTCTGACATCACAGATAAAGTCCCGTATGTGACAACCAGAAGTGTCTGTTCCTAGGCAGGTTCtagtctaataataataataataaattacatTTATAAAGCGCAGATTAGCACAAGATGTTCATCTGCGCTGAATACAGAAACAATACACAATAACTAGAAACATAAAAGCTAAGTTAATCAATGGGAATTGCAAAAACAACTAAATAAAGGcttttctataaaaatatgTCTTTAAGTGTTCTTTAAAAGAAGGTAATGATGTAATATGCCTAATACTAGATGGTAAAGTGTTCCATTCTACTGGCGCAGCGTATGAAAAAGTCCTACCACTAAGAGTAGGTCGAAGTTTAGTCGGTGGAGGTGCTAATAAAAGCTCATTATTGGACCTAAGATTATAACCAGACTGCTTTTTGATAGAAATTAAATCAGATAAGTAACTAGGAGCAAGACCATGAATAGCCTTAAAAGCGAAAATAAGTATCTTAAAACGTATTCTAAATCTCACTGGTAGCCAGTGGAGATCAGCCAAGACAGGAGTAATATGCGAAAAGCGTGGAGTTAAAGACACTAAACGAGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PDZ2	TATA box-binding protein-associated factor RNA polymerase I subunit C OS=Mus musculus OX=10090 GN=Taf1c PE=1 SV=1
Q6P773	TATA box-binding protein-associated factor, RNA polymerase I, subunit C OS=Rattus norvegicus OX=10116 GN=Taf1c PE=2 SV=1
Q15572	TATA box-binding protein-associated factor RNA polymerase I subunit C OS=Homo sapiens OX=9606 GN=TAF1C PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005722 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20642 all species →	TAF1C_HB	TAF1C, helical bundle domain	Domain	Interproscan
PF20641 all species →	TAF1C_beta-prop	TAF1C, beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038801 all species →	Family	TATA box-binding protein-associated factor RNA polymerase I subunit C	Interproscan
IPR049090 all species →	Domain	TAF1C, helical bundle domain	Interproscan
IPR049087 all species →	Domain	TAF1C, beta-propeller domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15319 all species →	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001164 all species →	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001650 all species →	Cellular Component	fibrillar center	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000064382.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.