Gene detail

Detailed information of ENSQPTP00000064396.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031565469.1, general transcription factor IIH subunit 4-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70422	General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE=1 SV=1
Q92759	General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=1 SV=1
P60027	General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004644 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03849 all species →	Tfb2	Transcription factor Tfb2	Family	Interproscan
PF18307 all species →	Tfb2_C	Transcription factor Tfb2 (p52) C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004598 all species →	Family	Transcription factor TFIIH subunit p52/Tfb2	Interproscan
IPR040662 all species →	Domain	Transcription factor Tfb2, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13152 all species →	TFIIH, POLYPEPTIDE 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03144	TFIIH4, GTF2H4, TFB2; transcription initiation factor TFIIH subunit 4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.