Gene detail

Detailed information of ENSQPTP00000064908.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031554140.1, uncharacterized protein LOC116291154 isoform X1 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000076165

TCCGTTTCTCAGATCATCCGAAGCGCATCTTGTCTTTCTTCACTGACTGCCATCTTTAAAGCGTTCCTCAAAATAAGACAATTTCTTCCCTTATTTCCCATCAAATTCAACCAAAATGGCTGGAAATCAAAAGTTTCACATCAGTAACCTATCTCCAAAATCAACCAAGGAGAGCCTTGCAAAGTACCTTGGATTAGATGCAACTCCATACTTACGATCATCCAGCTGGGTCGATCTGCCACTTGACAAGTCGGGCAAGTCTTTAGGTTTTGCATACGTTAATGTCCCCACTCACCTTGGGACCCACATGGCTGATCTAAATAACACCAAGTATATGGACAAGAGGATAGTTGTTCAGCCAGTTTATGGCAAGGGTAGCCAGCCATCTATGTATTCTAGCCCAAATGTTTTTGTGCCATCCGATATGGCAAATTATGCCAGTGGCGTTTGGTCCAGACCTGGAAATATTCGTAACCGAAGGTACGGTGGACATCCAATATCCTATGAACAAGTGTCTATCCCAGTGGAAAAGAAGCTGGCTCTCATTGATGTAGCCAtcaatttaacaaataaaatCTTCTCTCTGGATCTAGACTTCGTACTCGACAGAGCACTTAATGCTGGCATAGAGAAGATGATCCTGACAGGCAACACTATTCAAATGTCTGACAAAGCAGTCCTACTTGCAAATCGTCACCCAGGTTTTATTTATGCTGGTGTTGGTATTCACCCACACTTTGCCGAAAAACAATGGAATGCAAAAACTCTTGAAGTCATGAAAAGACTGGTTTCATTGCCAGAAGTAGTTGCAGTTGGTGAAGTGGGCTTGGATTTCCACAGAAACTACTCCAAGCAGGAAAACCAAATAGAAGCTTTTGAAAAGCAGgTTGAATTGGCCTGCGAGTTTAAGAAGCCTCTTCTTGCACATGAGCGTGCAGCCCACCAGAAATTCATGGAAATCCTAAGCAAGTTCAGGGGTCGTCTGCCTCCTATCGTGGTTCACTGCTTCACTGgaacaaaacaagaaatgaaaactTATGTAGCAATGGGCTTTTATATTGGAATTACAGGGTTTATTTGCAAAGAAAAagttgggaagaacctgagaGAAGCCATTGCAGACTGCCCTCTGGATAGAATACTACTAGAAAGTGATGCCCCATACATGATCCCTAATGCACCAATCACAGATCTGGATAGCGTATGCCGATCTTTGATCTCAAAGTGCAAGACTGGAAGAAATGAGCCTTGTACTCTTCCCGTTGTGGCTTACACTGTTGCTAAGTGCCTTGAGGTTGATGTTGAAGAGGTTACGAAGGCAACAACGGACAATGCTAATAGAGTATTCAATTTGACGAATACTACACCTGTAGACGAGGAAAGCTAAGGTGTaaattttttacaaaatataaAGGATTACTGGATTATTCACTAACGATTACCAGTAAACAAGGTATATCTTGATTACAGATATTACCAAAATACAGTTTCACATTCAATCATATAAAACTATATTTATGTTTAAAGTCGGTTTAGAAAACTTACGCGAGATAATTAAAAATGGATTTGTTTGTTCAAaggttttgaaaaattatcccaaaaaaaattagaaaaaaattatacaaaaatgtTATGTTATGAAATCAAGTATCATTCCTTAATAATGGAAATATTATTAACATTTGGAATTTTAGAATTTTCCAAAGACAAAAGAGAAATCCACAACACTAGATTAATAAAACTAGTGTTTATTGAAAATGTTACTTAGTTTATGAAGAGTTAAAAAAACCATATAACAAAATTCTAATAAATCTTAGCTTTACTTCAAACCAATATGTCACAGCACAGCCATCACTGCATAGACCTTTTCTGAGTTTCACAAATATGATGCATTCTGGTATAGCTTGGGTtactacaaacaacaccatttAATGATAAATTTAGCTTTTAATACTAGatttaaaatgaataaaaaacgCTACTAAATTACGACGTTTCGACATCGTCTGATGTCATTATCAAGTAAATTAATATTCAAGTCAGAAGCATTTTCAGGTCAATACATGCTACAGTGATTATATACAAAAGGATTATCAACAAAAGtgttttttgctttgattGAGTCTGATTTAGTGTTCAGGGTGGGTGACTTCTTTCTTATGAATAGCATTTTGTAAATCAGGCAGTCAAATTAAGTTTTGCACTTTTTTAAGATGGTAAAGTTCTGCCTGGGTGGTGCTGTTGTGAGACCGTGTTCTTCTAGATGATGCTTTCCAGTAGCTGAATAACGGCGTTCTTCAATACTCTTGTGCAGATAACGGGCTGTATAACCAACATAACTCACATCACATGAGCCACATTGATAAATAAACTACAAGTTGTTGGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D8MKW4	3'-5' ssDNA/RNA exonuclease TatD OS=Erwinia billingiae (strain Eb661) OX=634500 GN=tatD PE=3 SV=1
B2VG45	3'-5' ssDNA/RNA exonuclease TatD OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=tatD PE=3 SV=1
D0Z9R0	3'-5' ssDNA/RNA exonuclease TatD OS=Edwardsiella piscicida OX=1263550 GN=tatD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005846 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026 all species →	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001130 all species →	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR050891 all species →	Family	TatD-type Metallo-dependent Hydrolase	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10060 all species →	TATD FAMILY DEOXYRIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03424	tatD; TatD DNase family protein	EC:3.1.21.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.