Gene detail

Detailed information of ENSQPTP00000064915.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031559442.1, uncharacterized protein LOC116295682 [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

ENSQPTT00000076173

ATGGAGAATATTATTAGCTCAAGTGAAGTAGCGGGTGTTGACTTGCAGCCAGCAAACGCGTCCAACGAGCCGGACTCGAAGTGTAGAAGTTCATCGAAAAGACGCTCAAAAACCCGCTCAAAAGTCTGGGAAAAAGTTGCTTGGTTTACTAGAAAGGCAAAAAGTAACAGGGAAAATAAAGCTGAAAGCCTCGAAGAAGCAGGAAAAGGAGTTAAAAGTCCATCGTTGAGTGTACTACGAAGTGAAGAACAAGAGGTTCCTGTGTTGAATTCCGCTGGAATTAAACTGAACTCtttttacaaaacaaaaacaaaatcggGGATAAGAAAGACAAGGAGCTTTAACtatttgaaaagaaagaagttaaAACATTTGGCCAGTGATGCAAATTCGAGTTTACAGGAAGATAATAATAAGGAAAACGCAGACCCAACTTCGACGAGTTGTCAAACAGCAACAGGGAATTTTCACGACTTTGCTGGATTTGGTCGAAAATGCTCTAATACTACTGCTAGTTCTACTCTATTGGTAAGTGAAATGGCAAAACAAATGAGCTTAAAACAAGAGGAACAGTTAAAAGGAAGTGTCAGAAGTTCATTGTCTTTGCCATTGAGTTTGTTGTCTTTGAATGAAAGACCTGTTCCTGACGTCTGTAGCCCAAGCTGTCAAGGCCTTCTTTGTGGCTGTAAGCCGAAAAATAAGAGTTTCTCAGGCCCGAGCTACAATAGTTGGCCCCGCAAGAAGCGCTTATTAGCTGCGAATCATTCCTACGAGGCTTTTTCCCCGCCTCAGAAGCAGAAAAGAATTTGTGGTCTTAGAAAAACCGCTACTTTTAGTGGATTCGACTCCTCAAAGTTGTGCCTCAAAGAGTTTAAATCAGATGGGAGTGAACTCAGAATGGGCAAAAGTACACCACTACTATCTGGAACCAACCAAATAAAAAACCAGAACGGATTAACAATAGGGGTTATTCACTTCTTTAAGAGTTCAGGAAATAATTATTCTATAGTTGGTAAAGATGGATGTATTCCGAGGGCAATATTGCCAAATGATGTGAAAGATTTGGATGTGTGTAGTAAGTGTTCAATAAAGCAAACAAGAGATGATAATACTGACATAGACGTTGTTGGAAATATTGGAATTTCAGATACTTTACATTCAAATTTATGTCTGGATGCTAAAATGTGTGATGACACTGAAGGGTTATCCTTGACGTTGCAATCCGATTTGCTGGATAATGAATTTTTTGCTGAAAAAGAACAATGCAGTGAGGAAAACAGAAACAATACAGAGAACATTTCAAAGGATTTAGATGAGAGTGCCAATACTTGTGCTATTGTGTCAATGAAAGAATGTTTTATGGTTAAAGACCCCTTTAATGAGGTCACTAGTCCGACTTCACAACATCTCATCACAGCATCACAACATCAAGAAAACATTAGTCAACCAGACACACTGAAAAAAGACATTCATCAGTTATCTGAATCTATGCTTTCATCATCAGATAATGGACAAGTAATTTTGGAAAGCCAAGAGATAATTAGTAGCTCAGATGCAAGTGCTTTGGACTCAGTACATTTGAATTCGTTGAATGAAATATGTGCGACTGACAAAAGAACAGCTTATGCAAAGCTAGATATCATTAGAGAAATACCAGATAGTCTTGCTAAAGGgaatactaaaaatattgaatcacCCAAGGAATATGATGAACATAGTATGGCACAGGCGAAGGAAAGTCCAGAAAGCAGTCAAGCATCAGAAACTAGAATCTACTGTATAAAAATAGAGGATCAAGTCACTGATTTTTCTAAGGAAGGCAGAATCGATTTCCAAGCTGAAACCAAACTTCAATCTCCAAGTACTTTGTCAGATCTGATTATTGAGGAGTTAAAAGATAGTACTTATGTCAAGGAAAATCCACTTTCCCAAAGTGAAGATAATTCAAACACATCAGAGACATTGTGTACGATGACAAATGATTCAGCACCTGAATcagaagaaaaagatgaaacatCCGCTGCAGAGAAGAATACGATTGGTGATTCTTCACTACCATCAAACATGGCAACATCAGACGAAGGGAAATCAATATCAAAAGATGAAAATATTCtaccaaaaattaaaagtgtTAATTCAAATTTCTCCTCTAGAGTACCTCTAAAGTCTTCAGGTGGAAACAAAATACcagaaaataaaagtaaaaacattCTAGGAAGCAGTTTACAGCAGACAAGACGAATAGTGCTTAAACAAGGCAAGCCAAAAGTTGATGGGCCACATTTTAAGCATCAAACAGAAACTATTTTGAACTGGTTTTCAGAATTCAATGATGAACAGAAAAATATACTAATCAAGAAACTTTTGGAGCAGTGTGAATTACCTCAAATGCACCTTCTTTCTGTCATTATGGAGCCAGTCCTTCACAAGACCTGTCCGTCAAATTGTCAAGACATGTTGGCATGGTTACCACATACAGTGACCAATGCTGTTATGTCATACTTAGATCCAGAAAGCCTTTGTAGATGTAGTCAAGTCAACAGATTCTGGAACAGCTTGGCAAGCAATCCATTGATCTGGAAAGAATTGTGCAAGAGCAATGAATGGCAGTTATCCCgaaaaactgaagaaaaacAGATGATATTATACACCTTGCCTTGTGGCACTGTCCAGtgGAAGAAGATGTTTGCCGAAAGATACCTCCTCAGAAAGAACTGGTTGAATGGAAAATGTAAAGTTAGAACATTTGAAGGGCACACACAAGGCATATCTTGTGTGCAATTTGACGACACTCGTATTGTAAGTGGCTCAACTGATAAGACAATCAAGGTCTGGGACCTTAGTCGTGATGATAGCCATGCTGTCCTGACACTAGCTGGACACTCAGGGACTGTACGCTGCTTGAATCTGAATGGTAATAGACTTGTCAGTGGGTCTGTTGACAGATCCATTAAGgtatgGGACTTGTCATTTGAGTCTTACTGGAGTGGAGCATCTTGTAAAGTGACTATGGTTGGTCACATGCATACAGTCAGGTGTTTACAGGTTGATGATGAAAAGGTTGTAAGTGGTTCATATGACAAGACTCTGAAAGTCTGGGACCTCAAGACAGGACAGTGTGAATTAACTCTAAGAGGGCATAATGCAGCAGTCCTCTGTGTTCAGTTTGACGACAATAAAATTGTATCAGGTTCTTATGACAACACTATAAAGGTTTGGAGTCTTGATGAAGGTGAATGTTTAATGACCCTAGCAGGTCATCATGATGCTGTTACCTGTCTTAACCTGACCCAAGATGGCAGGAAGGTCATAAGTGGATCTCTGGATCATAACTTGAAGTTCTGGGACTTGGCAACTGGAAAGTGTATTGGTACTCTGGACTGGATAAGATCAGAAGGACACACTGGTGTCATCAGGTGCTTACAGTCAGACAGCTGGAGAATTGTTAGTGCTGGTGATGACAAGACCCTAAAGATGTGGAGTTTAGAGACTGGTCAGAGACTTCTCACCCTTCGCTGTCACACTGATGGTGTCACATGTCTACAGTTCAATGACTACAGAATCGTCTCAGGTTCTTACGACAAGACCGTTAAAGTATGGAATTTCTCACCTGAGCATGCGTTTTTGAATTCATCGTGA

Transcript

ENSQPTT00000076173

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B6Q4Z5	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=sconB PE=3 SV=1
B8M7Q5	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=sconB PE=3 SV=1
Q00659	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=sconB PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007818 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849 all species →	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10260	FBXW7, SEL10; F-box and WD-40 domain protein 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.