Gene detail

Detailed information of ENSQPTP00000066538.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031570540.1, E3 ubiquitin-protein ligase CHFR-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000078041

TTTACGAGGAAATGTTTGGTTGTGTGGTAAGTCAGAGCCCCACCCGGGCGCGCGCAAAAGGGCTTATTTTAATTagttttgaacaaaaaaataaaaaacacataGAGAAAATGcgctaaaaataataaattttattcACCAAATTGCTTTGAAGTCTAAAACCCTTTGTGTGGTCTACCTGTGGATCAagtttgaaaacaaatatGGCGGATTTTCATTTACCATAATAGTCAGTGAATTCAAACTCTTttagataaaaaaatacatacgAATCTTCAGAAAGAAGGCATTCAAAAAGTATGCTCATTCTTAAAAGGAATGATAAGGAAGATTCCAATCCCTCATTTCAGCCAGAAAGAATTGAACTTATAAAATCAACGACAAGAATCGGCCGAAGTGCTGAACACGCAGACATCGTCATGGACAGTAAAATATCACCTCGTATGATCAGTAGACTACATGCACAGATTACTCGAATGGATGACCAGTACTTCATATCCTGTACTGGTATGAATGGTATGCTGATCAATTCGGTTAAACGAAAGAAATCATTGCTAAAAGATGGCGATGTTGTTGTGTTCGGAGGTGCTGGGGTACAGACGTCTGAGGGCAGTGTAATTTCAAAGCTACAGTCCGAGCTGGTTTATGTCTTTCGGTCTCAAAGAAACACTATTGAAGAGAAGAAAGATGAcgagaaaatacaaaataaagaacTAAGGGAGAATGCTTTTTCTACAGATGAACTCTCAGTTGTTGATGCTtacagaaatagaaaaaaacctTGTAAGACAAGGAAGGACTCAGATATACAAAATCAAGCCAATGAAAAAAGAGATCCTAAAGAACATagaaaaaattctaaatttaTATCAGATGTAGCTGATGAGTCCTCACCCGGTGAAGGAACAAGTGATGGCAGTgttttgaaaagaaagaaaaaaagttttccaatACATTATTATTTCAATGATGTTGAcaagaatgatgatgattgtaatAAAAGTGGTTTCACTAAAATGCCTTCACAAAAGAAGAGGAACTCAAGTCAGAGTCCAAATGAATCATCATTAAGTGATGATGCAAAGGATGTGATGGCGgtgaagagaaaaaagaaaagatctgCACTGCCTTTTGATTCTGATGATGACAGCATTAATTCTCCAGTCAAGAAATTACACAAGACTGATTCCTCAACCAGTGAGattgaaaaggaaaacacCACAGAAAAGTTAAAGCCAGAATTCAACGACAAAGAGTTCCTTGATGACCTTAATGAGGAATTGCTGTGCTGTATTTGCCGAGAGCTGCTTGTCCTTACACATGCTCTTCCTTGTTCTCATACCTTCTGTTATGAATGCATTAGAGACTGGTTACGACAGGGACAAGATTGCCCAAGCTGTAGAGCCAAAGCATCATTTGATCATCTTGTTCCTGTCAAGGTACTGGATAATACTGTCGATAAAGTCGCTTTAAGAGTACTGAGCCCTGAACAGcttaatgaaaggaaaacaagAATCCAAGAATTACAAGACAAAATCAATGGAAGAATGGATGCAGACTCGGAATTGAAAGCAGAATATGGACATGTGCACAGTCAAAAAGAGCATTGTGAAAAGTGCAACTTGCCCATCTCAAATAGGTTACTGCGCTGGGTGCTCATATTCCCCCAAACGTCATCCACAGCCTATTATCATTTCAAATGTTTCAAGCCACCTCAAAGCCTTACGATAAGTCAAATCAAAATTGCTAATGGTTTGTCCAAAACagatatgaaaaaaattagaacCCTTATCAAATCATGACCAGGTCATTGACTATTTACattaatataatatttgatatgaattattttcttgaattttgtttttggcCTCTGATATTGTCATAAACAAAATAGCTGTTTAATATATTAGTCTCTTTTGGAGGTTTAacgtttttttcaatttcaaatcacatgtcattcccttggtTATCATCATTCTTCATTTTGAAGGTGGACTAGATAGCATGAAAATCATCTAAATTTTAATTAAGCTGAAACTTTACTGGAAATATAACCCTTAAAGTTCTGATAATCACTGGCGAAAATcactcaaacttggattcagctgaaacttgaagaatactctttaaagatCCAATAATCACTGCATGGAGTGTTTTCttgatattcaggacgaaagtatgatatttttacgattattttttggagtctgtgacgtcatacactcaacatgtTGATTGTATGACGACCCTTAAAGATTATTCCATTGAAGTTTCAGTCAAATTAAATTTCTCTGAAGATTTTCGTGCTAGTCCCCTTTAACCatttcaaatgaaaagaaatatgaatatggattcatttcaaacaaagaattttattctcaagagaatgagatGGGGTCAGAGATGCGGTCCTTCTGCATTTACTGCAAACGTATTGTATTCTTTCTTAGCTTCGAGTTTCTATTTTATAACTTGGGGTCAAGTACCCAAAGAAGGAGcccagaaatggaaaaactcACGCCTAAGCTAAAAGCATCTATTGCTTAATTGTAGTCTATAAAAAGTCATTTTTATGTAAATAACAGTTGTAATAACTATGAAATTAATTGCAGTCCGTATGAGTGTATGTACTTTACTGTGCATGAACCAGATTTTATAATGTATATATTGTATAAGGCAATGGGTATATTAATAAATGAGGGAAAGGAAATTTTGTGATGTGCAATCAGACATATTCATATCATGAACCAGTTTTTATAATGTATATATTGTATAAGGCAATAGGTATATTAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43254	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2
Q9P3U8	Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC548.05c PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010334 (this species only)
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR036957 all species →	Homologous_superfamily	Zinc finger, PARP-type superfamily	Interproscan
IPR047126 all species →	Family	RING finger protein 141-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12109 all species →	RING FINGER PROTEIN 141-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0051865 all species →	Biological Process	protein autoubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSQPTP00000066538.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.