Gene detail

Detailed information of ENSQPTP00000066874.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031548757.1, CDK5 regulatory subunit-associated protein 1-like [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JLH6	Mitochondrial tRNA methylthiotransferase CDK5RAP1 OS=Rattus norvegicus OX=10116 GN=Cdk5rap1 PE=1 SV=1
Q8BTW8	Mitochondrial tRNA methylthiotransferase CDK5RAP1 OS=Mus musculus OX=10090 GN=Cdk5rap1 PE=1 SV=2
Q96SZ6	Mitochondrial tRNA methylthiotransferase CDK5RAP1 OS=Homo sapiens OX=9606 GN=CDK5RAP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012304 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00919 all species →	UPF0004	Uncharacterized protein family UPF0004	Family	Interproscan
PF01938 all species →	TRAM	TRAM domain	Domain	Interproscan
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013848 all species →	Domain	Methylthiotransferase, N-terminal	Interproscan
IPR002792 all species →	Domain	TRAM domain	Interproscan
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR023404 all species →	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan
IPR005839 all species →	Family	Methylthiotransferase	Interproscan
IPR006463 all species →	Family	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR020612 all species →	Conserved_site	Methylthiotransferase, conserved site	Interproscan
IPR038135 all species →	Homologous_superfamily	Methylthiotransferase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43020 all species →	CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035596 all species →	Molecular Function	methylthiotransferase activity	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0045736 all species →	Biological Process	negative regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase	EC:2.8.4.3	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.