Gene detail

Detailed information of ENSQPTP00000067167.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031549447.1, short stature homeobox protein-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families

Sequence

CDS

Transcript

ENSQPTT00000078829

ATGACTGGAGTTTAATATAGAACTGTATAGGATAAATGCCAAGTGGTATTTGTTCTGACGCTCTCTATTGTCATTGTCTCAGTTTTGGAGTGTGGTTCTAGTTCTCGTGGCGGGACTGTAGCACTAATTGGCTTCATTTGGTCCATTTCGACGAGTGTTCAGAAGTCAACTGGTATTCTTGACATATTCACCTATTATTGAGATCAAGTGTGTTGATGTATGATATACTGATCTGTTGGTAACCGACGACCAGCCAGCCAGTCAATCACTGACTTCCCGTGTACTTGGGGCACCACAAAATGGAAGGTCTGGCAGCGTTTGTTTCGAAATTCGACGAAAACACCTCCAGAGAAAACAACGAACTCAAGAAAGTGCCACCAAACAATTCTCGTATAAATCCAGAGAAAAAAGATTCCAGCTCAAACACAAACCAGATAAATACTCTTCCCTTCAGCATCGAAGGCATTCTGGGTATTAGTGATAATGGCGCTGCTAAGAGTGTTCGTCAAGATGAAACTAGAATACACTCTACAGAATTCAATCAAGGTAAGGACATGTCAAAATGTTCACCCCGAACCCGCGCTCCGAGGAACAGAAAGAACTTCACAGGAGAACAGTTGAGGGAACTAGAAAGGCTTTTTGATCAAACTCATTATCCTGATGCTCTGACGAGAGAAGCTTTGGCCAAGAAACTGGGGCTCTCTGAAGCACGTGTTCAGATTTGGTTTCAAAATAGACGCGCAAAAAGCCGAAGACAAGAGAGTCCAAATCAGAAAGGATTCATAGTTCCAGCCAGCGAATCCTCTTCGACGACTCTGTCACCTCAAAGCCCCGTCAGATCACCCACCGAGACGACGCAAGCATACCCTACGCTACCTCCCTTCCGATACAGAACAACCCCGTATTGTGGCGACCACTTCTGTGCATGTTCAAGGTTTTGTATGAATGGTGTCCCTTCGCCTACCAACGCAACACTCAATCCACAGGATTTGGATTACTATCGCGATTTTCATAGGCATTCGAGTATAGTCAATCTAAGGCTCAAGGCTCGCCATCACCATTCTCCTACCAATACTAACTACTAGACTAGATAGTCACGATACAGGAATGACGAAATGTTACTATACTTAGAGCAGTGAAAAGCTCGGTGCCGTATGCGTGCCGTGTCGCCGTGAcggtgatgttttctagaattttgattggctatttttctctctcgtGTAATGTGATTAGTCTGGCAGCGCCGCGACTTTGGCGTGATCATGTGTGCGCCGTGATCTCGCCGTGTTTcgggcatttgattggatgaagagTAAATTATCGCGCAGTGTGATTGGATTGGCGCATACCTTCCCGTGTCATGACCGCGCTCGTGCCGTAAGCTTTTCACAATCATACGAAAACCGCTCTattgtttagtttagtttagtttatttgtcacaatataaacatatacattttataaaacttgagaCATACAAATTTTGTGACTGGCGAAGAAAACAGAACTTTCGTCCCAATTGATATTCCCTCTCCATACAATTTACATACAGTACAAACAtaattaacattaaaattgacgagaaaaaacaataataaaaagaaaaacatatcaaaatttatcaaaattcgaattcaaaaaattttaaggTGGTAAGTAATGTTCCATTTTGGAAGCAAAATGGGTGGTcacaagttccttaaatttggataaGTCAGTCCAGTCGATCGCAGGCACTAAATTAAGGTCTCCGACAAAAATAATTTGGCTGTATTCCGCGGGTGCACATTGAAGTGTAGAGTTCAATTTATCTAGGACATCCCGGTACGCTCACGGTAATGAACGTCCGTACAGTAATTTTCGTACAGCAGAACGAATCTTTTTTTGACCATACTGATTTGCATGTTTTAAAAATGGAATTAGCTTTATTTGATGAATTGCATTAATTATTGCAATTGTGGTGAAACTGATAGCCACGCTACAATGACacaatattgatggttttcacggcggccatgttggaggaacttaacaaaagaatcgccaatgaattattttgttatatcctccaacatggccgccg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35750	Short stature homeobox protein 2 (Fragment) OS=Rattus norvegicus OX=10116 GN=Shox2 PE=2 SV=2
O15266	Short stature homeobox protein OS=Homo sapiens OX=9606 GN=SHOX PE=1 SV=1
O60902	Short stature homeobox protein 2 OS=Homo sapiens OX=9606 GN=SHOX2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009079 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR052631 all species →	Family	Paired homeobox Bicoid subfamily	Interproscan
IPR000047 all species →	Conserved_site	Helix-turn-helix motif	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003654 all species →	Domain	OAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46255 all species →	SHORT STATURE HOMEOBOX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:1990837 all species →	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09331	SHOX; short stature homeobox protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.