Genomic Location: chr5:993761...999979
NR annotation: XP_031549754.1, counting factor associated protein D-like isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000068103.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O70370 | Cathepsin S OS=Mus musculus OX=10090 GN=Ctss PE=1 SV=2 |
| A0A1S4F2V5 | Cathepsin L-like peptidase OS=Aedes aegypti OX=7159 PE=1 SV=1 |
| Q54TR1 | Counting factor associated protein D OS=Dictyostelium discoideum OX=44689 GN=cfaD PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000591 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08246 all species → | Inhibitor_I29 | Cathepsin propeptide inhibitor domain (I29) | Domain | Interproscan |
| PF00112 all species → | Peptidase_C1 | Papain family cysteine protease | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR025660 all species → | Active_site | Cysteine peptidase, histidine active site | Interproscan |
| IPR013201 all species → | Domain | Cathepsin propeptide inhibitor domain (I29) | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR000668 all species → | Domain | Peptidase C1A, papain C-terminal | Interproscan |
| IPR013128 all species → | Family | Peptidase C1A | Interproscan |
| IPR025661 all species → | Active_site | Cysteine peptidase, asparagine active site | Interproscan |
| IPR039417 all species → | Domain | Papain-like cysteine endopeptidase | Interproscan |
| IPR000169 all species → | Active_site | Cysteine peptidase, cysteine active site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12411 all species → | CYSTEINE PROTEASE FAMILY C1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008234 all species → | Molecular Function | cysteine-type peptidase activity | Interproscan |
| GO:0004197 all species → | Molecular Function | cysteine-type endopeptidase activity | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0005764 all species → | Cellular Component | lysosome | Interproscan |
| GO:0051603 all species → | Biological Process | proteolysis involved in protein catabolic process | Interproscan |
ENSQPTP00000068103.1.Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
