Genomic Location: chr5:377726...390445
NR annotation: XP_031553872.1, major vault protein-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000068161.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5EAJ7 | Major vault protein OS=Strongylocentrotus purpuratus OX=7668 GN=MVP PE=1 SV=1 |
| Q6P3L0 | Major vault protein OS=Danio rerio OX=7955 GN=mvp PE=2 SV=1 |
| Q9DGM7 | Major vault protein (Fragment) OS=Ictalurus punctatus OX=7998 GN=mvp PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001599 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01505 all species → | Vault | Major Vault Protein repeat domain | Domain | Interproscan |
| PF17795 all species → | Vault_3 | Major Vault Protein Repeat domain | Domain | Interproscan |
| PF17796 all species → | Vault_4 | Major Vault Protein repeat domain | Domain | Interproscan |
| PF11978 all species → | MVP_shoulder | Shoulder domain | Domain | Interproscan |
| PF17794 all species → | Vault_2 | Major Vault Protein repeat domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043179 all species → | Homologous_superfamily | Major vault protein repeat domain 2 superfamily | Interproscan |
| IPR039059 all species → | Family | Major vault protein | Interproscan |
| IPR002499 all species → | Repeat | Major vault protein, N-terminal | Interproscan |
| IPR041139 all species → | Domain | Major vault protein repeat domain | Interproscan |
| IPR043023 all species → | Homologous_superfamily | Major vault protein repeat domain superfamily | Interproscan |
| IPR040989 all species → | Domain | Major vault protein repeat domain 3 | Interproscan |
| IPR041136 all species → | Domain | Major vault protein repeat domain 4 | Interproscan |
| IPR021870 all species → | Domain | Major vault protein, shoulder domain | Interproscan |
| IPR041134 all species → | Domain | Major vault protein repeat domain 2 | Interproscan |
| IPR036013 all species → | Homologous_superfamily | Band 7/SPFH domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14165 all species → | MAJOR VAULT PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17266 | MVP; major vault protein | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
