Genomic Location: chr5:5270415...5273570
NR annotation: XP_031573882.1, amiloride-sensitive amine oxidase [copper-containing]-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000069142.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P36633 | Diamine oxidase [copper-containing] OS=Rattus norvegicus OX=10116 GN=Aoc1 PE=2 SV=1 |
| Q8JZQ5 | Diamine oxidase [copper-containing] OS=Mus musculus OX=10090 GN=Aoc1 PE=2 SV=1 |
| Q9TRC7 | Diamine oxidase [copper-containing] OS=Sus scrofa OX=9823 GN=AOC1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000872 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02727 all species → | Cu_amine_oxidN2 | Copper amine oxidase, N2 domain | Domain | Interproscan |
| PF09248 all species → | DUF1965 | Domain of unknown function (DUF1965) | Domain | Interproscan |
| PF01179 all species → | Cu_amine_oxid | Copper amine oxidase, enzyme domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015800 all species → | Domain | Copper amine oxidase, N2-terminal | Interproscan |
| IPR000269 all species → | Family | Copper amine oxidase | Interproscan |
| IPR015328 all species → | Domain | Domain of unknown function DUF1965 | Interproscan |
| IPR015798 all species → | Domain | Copper amine oxidase, catalytic domain | Interproscan |
| IPR016182 all species → | Homologous_superfamily | Copper amine oxidase, N-terminal | Interproscan |
| IPR049948 all species → | Conserved_site | Copper amine oxidase, TPQ-binding site | Interproscan |
| IPR049947 all species → | Conserved_site | Copper amine oxidase, copper-binding site | Interproscan |
| IPR036460 all species → | Homologous_superfamily | Copper amine oxidase, catalytic domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10638 all species → | COPPER AMINE OXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005507 all species → | Molecular Function | copper ion binding | Interproscan |
| GO:0008131 all species → | Molecular Function | primary methylamine oxidase activity | Interproscan |
| GO:0009308 all species → | Biological Process | amine metabolic process | Interproscan |
| GO:0048038 all species → | Molecular Function | quinone binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11182 | AOC1, ABP1; diamine oxidase | EC:1.4.3.22 | Tryptophan metabolism | ko00380 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
