Gene detail

Detailed information of ENSQPTP00000073390.1 in Actinia mediterranea

Genomic Location: not available for this species
NR annotation: XP_031552110.1, lissencephaly-1 homolog [Actinia tenebrosa]
Species abbreviation AMEDI · all data for this species · gene families

Sequence

No sequence record for ENSQPTP00000073390.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S338	Lissencephaly-1 homolog OS=Nematostella vectensis OX=45351 GN=v1g242515 PE=3 SV=1
C3XVT5	Lissencephaly-1 homolog OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_59218 PE=3 SV=1
Q4RJN5	Lissencephaly-1 homolog OS=Tetraodon nigroviridis OX=99883 GN=pafah1b1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006968 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050349 all species →	Family	WD repeat LIS1/nudF dynein regulation	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037190 all species →	Homologous_superfamily	LIS1, N-terminal	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR017252 all species →	Family	Dynein regulator LIS1	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44129 all species →	WD REPEAT-CONTAINING PROTEIN POP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005875 all species →	Cellular Component	microtubule associated complex	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0007097 all species →	Biological Process	nuclear migration	Interproscan
GO:0031023 all species →	Biological Process	microtubule organizing center organization	Interproscan
GO:0047496 all species →	Biological Process	vesicle transport along microtubule	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan
GO:0070840 all species →	Molecular Function	dynein complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16794	PAFAH1B1, LIS1; platelet-activating factor acetylhydrolase IB subunit alpha	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.