Genomic Location: chr6:6795932...6802172
NR annotation: XP_031554575.1, N-acetylglucosamine-6-phosphate deacetylase-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000074100.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A7MBC0 | N-acetylglucosamine-6-phosphate deacetylase OS=Bos taurus OX=9913 GN=AMDHD2 PE=2 SV=1 |
| Q6P0U0 | N-acetylglucosamine-6-phosphate deacetylase OS=Danio rerio OX=7955 GN=amdhd2 PE=2 SV=1 |
| Q9Y303 | N-acetylglucosamine-6-phosphate deacetylase OS=Homo sapiens OX=9606 GN=AMDHD2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005857 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01979 all species → | Amidohydro_1 | Amidohydrolase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003764 all species → | Family | N-acetylglucosamine-6-phosphate deacetylase | Interproscan |
| IPR032466 all species → | Homologous_superfamily | Metal-dependent hydrolase | Interproscan |
| IPR006680 all species → | Domain | Amidohydrolase-related | Interproscan |
| IPR011059 all species → | Homologous_superfamily | Metal-dependent hydrolase, composite domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11113 all species → | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006044 all species → | Biological Process | N-acetylglucosamine metabolic process | Interproscan |
| GO:0008448 all species → | Molecular Function | N-acetylglucosamine-6-phosphate deacetylase activity | Interproscan |
| GO:0006046 all species → | Biological Process | N-acetylglucosamine catabolic process | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0016810 all species → | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01443 | nagA, AMDHD2; N-acetylglucosamine-6-phosphate deacetylase | EC:3.5.1.25 | Amino sugar and nucleotide sugar metabolism | ko00520 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
