Genomic Location: chr6:4606493...4622732
NR annotation: KAJ7389919.1, hypothetical protein OS493_028382 [Desmophyllum pertusum]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000074922.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q16526 | Cryptochrome-1 OS=Homo sapiens OX=9606 GN=CRY1 PE=1 SV=1 |
| Q8WP19 | Cryptochrome-1 OS=Macaca fascicularis OX=9541 GN=CRY1 PE=2 SV=1 |
| P97784 | Cryptochrome-1 OS=Mus musculus OX=10090 GN=Cry1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001194 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00875 all species → | DNA_photolyase | DNA photolyase | Domain | Interproscan |
| PF03441 all species → | FAD_binding_7 | FAD binding domain of DNA photolyase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036155 all species → | Homologous_superfamily | Cryptochrome/photolyase, N-terminal domain superfamily | Interproscan |
| IPR036134 all species → | Homologous_superfamily | Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR006050 all species → | Domain | DNA photolyase, N-terminal | Interproscan |
| IPR002081 all species → | Family | Cryptochrome/DNA photolyase class 1 | Interproscan |
| IPR005101 all species → | Domain | Cryptochrome/DNA photolyase, FAD-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11455 all species → | CRYPTOCHROME | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0032922 all species → | Biological Process | circadian regulation of gene expression | Interproscan |
| GO:0043153 all species → | Biological Process | entrainment of circadian clock by photoperiod | Interproscan |
| GO:0045892 all species → | Biological Process | negative regulation of DNA-templated transcription | Interproscan |
| GO:0071949 all species → | Molecular Function | FAD binding | Interproscan |
ENSQPTP00000074922.1.Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
