Genomic Location: chr7:3737692...3772331
NR annotation: XP_031558463.1, baculoviral IAP repeat-containing protein 6-like isoform X1 [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000075432.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9NR09 | Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=3 |
| O88738 | Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Mus musculus OX=10090 GN=Birc6 PE=1 SV=2 |
| Q11076 | Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans OX=6239 GN=ubc-17 PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002498 (this species only) · gene tree & orthology |
| Ubiquitin family | E2|UBC|UBC · all ubiquitin genes in this species |
| Ubiquitin family | UBD|UBC-like|UBC · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00653 all species → | BIR | Inhibitor of Apoptosis domain | Domain | Interproscan |
| PF00179 all species → | UQ_con | Ubiquitin-conjugating enzyme | Domain | Interproscan |
| PF12356 all species → | BIRC6 | Baculoviral IAP repeat-containing protein 6 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001370 all species → | Repeat | BIR repeat | Interproscan |
| IPR000608 all species → | Domain | Ubiquitin-conjugating enzyme E2 | Interproscan |
| IPR016135 all species → | Homologous_superfamily | Ubiquitin-conjugating enzyme/RWD-like | Interproscan |
| IPR022103 all species → | Family | Baculoviral IAP repeat-containing protein 6 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46116 all species → | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0006915 all species → | Biological Process | apoptotic process | Interproscan |
| GO:0032465 all species → | Biological Process | regulation of cytokinesis | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10586 | BIRC6, BRUCE; baculoviral IAP repeat-containing protein 6 (apollon) | EC:2.3.2.23 | Ubiquitin system | ko04121 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
