Genomic Location: chr7:1712418...1720547
NR annotation: XP_031573036.1, ribosomal oxygenase 1-like [Actinia tenebrosa]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000075919.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5ZMM1 | Ribosomal oxygenase 1 OS=Gallus gallus OX=9031 GN=RIOX1 PE=2 SV=1 |
| C3XRY1 | Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_123918 PE=3 SV=1 |
| A3KP59 | Ribosomal oxygenase 1 OS=Danio rerio OX=7955 GN=riox1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001763 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08007 all species → | JmjC_2 | JmjC domain | Domain | Interproscan |
| PF21233 all species → | RIOX1_C_WH | Ribosomal oxygenase 1, C-terminal winged helix domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003347 all species → | Domain | JmjC domain | Interproscan |
| IPR049043 all species → | Domain | RIOX1/NO66-like, C-terminal winged helix domain | Interproscan |
| IPR039994 all species → | Family | Histone lysine demethylase/ribosomal histidine hydroxylase NO66-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13096 all species → | MINA53 MYC INDUCED NUCLEAR ANTIGEN | Interproscan |
ENSQPTP00000075919.1 in Actinia mediterranea.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16914 | RIOX1, NO66; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase | EC:1.14.11.79 EC:1.14.11.67 EC:1.14.11.69 | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
