Genomic Location: chr9:6606557...6636896
NR annotation: XP_028512964.1, uncharacterized protein K02A2.6-like [Exaiptasia diaphana]
Species Actinia mediterranea · all data for this species · gene families
ENSQPTP00000079155.1 in AMEDI (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q91DM0 | Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) OX=492094 PE=3 SV=1 |
| Q6XKE6 | Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) OX=492095 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000001 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00665 all species → | rve | Integrase core domain | Domain | Interproscan |
| PF14893 all species → | PNMA | PNMA | Family | Interproscan |
| PF18701 all species → | DUF5641 | Family of unknown function (DUF5641) | Domain | Interproscan |
| PF17917 all species → | RT_RNaseH | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| PF17921 all species → | Integrase_H2C2 | Integrase zinc binding domain | Domain | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001584 all species → | Domain | Integrase, catalytic core | Interproscan |
| IPR043128 all species → | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR050951 all species → | Family | Retrovirus-related Pol polyprotein | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR048270 all species → | Domain | Paraneoplastic antigen Ma-like, C-terminal domain | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR040676 all species → | Domain | Domain of unknown function DUF5641 | Interproscan |
| IPR041373 all species → | Domain | Reverse transcriptase, RNase H-like domain | Interproscan |
| IPR041588 all species → | Domain | Integrase zinc-binding domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR37984 all species → | PROTEIN CBG26694 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015074 all species → | Biological Process | DNA integration | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
ENSQPTP00000079155.1.Genes whose expression across the transcriptome samples of Actinia mediterranea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Actinia mediterranea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
