Gene detail

Detailed information of ENSSJYP00000001322.1 in Catostylus mosaicus

Genomic Location: chr9:2140585...2149856
NR annotation: XP_002159317.1, G-protein coupled receptor-associated protein LMBRD2 [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSJYT00000001374

ATGTCAGTAGCACCATTTATTATAGAGCTCGTAGTTGTTGCAGTTATTACAGTATGTCTTCTTCATCAGTATGGAAACTGGAGGAAGCAGCATTTAATCGTGACTATCGCAGTGTTTATTGCatggtatttttctttcatcattgtttttgtcCTGCCACTTGATGTTTCGTCAaCATGTTACAGAGAATGCAAGAAATTACATCCTCTGCAGATGCAAAATATTACTACAAATAAGTCAGCTGATGCTGATGCACCAAATGATTTTTGCGAAGTCCCTTGGAGTTTTATGCCAAAGTATGTTTTGCCTGACCTTTGGAGAGTTGTCTACTGGTCTTCACAACTGCTTTCATGGATTATACTTCCAATGATGCAGTCATATGAATATGCAGGAGAATTCACAGCTCTTGGTAAAATAAAGAGAGCATTATATGAAAATGCACTTTGGTATGGTAGCTATCTTCTTATATTTGGAGTTCTGCTTGTTTATGTGGCAGTGACACCTAACCTCCAATTAGATGGGGAGCATCTTCGAATTATTGGAATAACTGCCTCAAATACTTGGGGATTGTTGCTTCTGATTATCCTAATGGGTTATGGTTTGATAGAACTGCCAAGAAGTGCTTGGAACAGATCTGTTCCAGGCCATATGCTGTCTcatacatttttcaaaatagccAAATTGAGTACAGAGAAGGAGGATACAGAAGAAGAACTAGCTGAGACTTTACAGGCCGTGGGCAAAGCATCTCAAGAAATTCGGTACAACAGCAGTCTTAGAAAGCACATTGATACCATTATTAAAAAGTGTCCAGAGGCAAGTGAAGGACAGTTCAGCAAAGCCACAGACGATTACATTGACTATGATGACGTCACAGGCAGGTCGATTCAGATGTACAGCGAAAAGTCATTGGTTGATTTGCACAAAAAAGTCATCGTTATCACGCAAAGGGCGCATCGGACCAATGTGCAATGGAATATGCTTCTGCAAAAAGCCTTTCAACTTGATGACATCGAACGAAATAGAGAAAACAGAGACAGGGTGTTCAAATCGtcattttcagaccatcagCCACGTAAAAGTGTCTTTTCAATGTCAATCGAATGGTATTGGAAGATTTGGATTCAACCAATTTTATACAAATTGGTTGCGATTTTACTCTTTTGTTTCACGGTTATTTTGATTTGGTCAGAAATGACGTTCTTCAGTACAAAACCAAAATTATCGATATTTGCCTTGCTCATTGGTGTAGCAAGGAGAGAGTacctttatttcaatattgaggtgatttgttttttcaccATATTCTACATGTGCGCATGCACTTACTATACTGTGTTCAAGATGCGGATATTCAACTATTATTACTTCGCTTTGAAGCACCAAACTGATGCAAACAGCTTACTCTTCAGTGGACTGCTACTTTGCAGATTGACATATGCACTGTGTCTTAATTTCTTGGCGATGATTCATTTAGATGGTCATGTCACTAACATAAATACATTGGAGCAGACTTCCTTCACTGTTTTTATGGGACACATGGATCTTGTATCATTCATTTCCAAAGGTTTGAACATTTATTATCCAATGACAATCCTGTTGGTTTGTTTCTGCACGTACTTCAACATTGGCAGTCGAATATTACATTGTTTTGGGGTACAGCAGTTCCTTATTGATGAAGACCTGGTCACTGAATACGTCAATGAAGGGAGGGATGTTGTTAAAAGGGAGAAAAGACGAATTGAAAGACTTATTAAAGGAGGCAGGGATTGGAGTAACAGAGGGAGACCAACAGTGAATAGAGGCTCGGGAATGCGGCCGAGCCAATCAGATGGTAGGattgacgatgacaatgatgacatCGATAGAATGGATTCAAAAACGAGACTAAACGAGCCGCGTCGTGCGCAGTATACAAAATCTGCCGATGATGATCGTGTGAATTTACTGGATGCTATGGAGCAGGATAGACCGACACAACCGCAAAGGAGTGTGGGATACACAACACTCGGGACTGCATCGCGCAGTGGTCCTCCGCGCAATCTCTTCGACGACTTTTAA

Transcript

ENSSJYT00000001374

CGGCCTAACACAGAGCAGATGTCCTGAACACTTCCCTGGAAGGAAAACACGTTAAAATACGATAATGTCAGTAGCACCATTTATTATAGAGCTCGTAGTTGTTGCAGTTATTACAGTATGTCTTCTTCATCAGTATGGAAACTGGAGGAAGCAGCATTTAATCGTGACTATCGCAGTGTTTATTGCatggtatttttctttcatcattgtttttgtcCTGCCACTTGATGTTTCGTCAaCATGTTACAGAGAATGCAAGAAATTACATCCTCTGCAGATGCAAAATATTACTACAAATAAGTCAGCTGATGCTGATGCACCAAATGATTTTTGCGAAGTCCCTTGGAGTTTTATGCCAAAGTATGTTTTGCCTGACCTTTGGAGAGTTGTCTACTGGTCTTCACAACTGCTTTCATGGATTATACTTCCAATGATGCAGTCATATGAATATGCAGGAGAATTCACAGCTCTTGGTAAAATAAAGAGAGCATTATATGAAAATGCACTTTGGTATGGTAGCTATCTTCTTATATTTGGAGTTCTGCTTGTTTATGTGGCAGTGACACCTAACCTCCAATTAGATGGGGAGCATCTTCGAATTATTGGAATAACTGCCTCAAATACTTGGGGATTGTTGCTTCTGATTATCCTAATGGGTTATGGTTTGATAGAACTGCCAAGAAGTGCTTGGAACAGATCTGTTCCAGGCCATATGCTGTCTcatacatttttcaaaatagccAAATTGAGTACAGAGAAGGAGGATACAGAAGAAGAACTAGCTGAGACTTTACAGGCCGTGGGCAAAGCATCTCAAGAAATTCGGTACAACAGCAGTCTTAGAAAGCACATTGATACCATTATTAAAAAGTGTCCAGAGGCAAGTGAAGGACAGTTCAGCAAAGCCACAGACGATTACATTGACTATGATGACGTCACAGGCAGGTCGATTCAGATGTACAGCGAAAAGTCATTGGTTGATTTGCACAAAAAAGTCATCGTTATCACGCAAAGGGCGCATCGGACCAATGTGCAATGGAATATGCTTCTGCAAAAAGCCTTTCAACTTGATGACATCGAACGAAATAGAGAAAACAGAGACAGGGTGTTCAAATCGtcattttcagaccatcagCCACGTAAAAGTGTCTTTTCAATGTCAATCGAATGGTATTGGAAGATTTGGATTCAACCAATTTTATACAAATTGGTTGCGATTTTACTCTTTTGTTTCACGGTTATTTTGATTTGGTCAGAAATGACGTTCTTCAGTACAAAACCAAAATTATCGATATTTGCCTTGCTCATTGGTGTAGCAAGGAGAGAGTacctttatttcaatattgaggtgatttgttttttcaccATATTCTACATGTGCGCATGCACTTACTATACTGTGTTCAAGATGCGGATATTCAACTATTATTACTTCGCTTTGAAGCACCAAACTGATGCAAACAGCTTACTCTTCAGTGGACTGCTACTTTGCAGATTGACATATGCACTGTGTCTTAATTTCTTGGCGATGATTCATTTAGATGGTCATGTCACTAACATAAATACATTGGAGCAGACTTCCTTCACTGTTTTTATGGGACACATGGATCTTGTATCATTCATTTCCAAAGGTTTGAACATTTATTATCCAATGACAATCCTGTTGGTTTGTTTCTGCACGTACTTCAACATTGGCAGTCGAATATTACATTGTTTTGGGGTACAGCAGTTCCTTATTGATGAAGACCTGGTCACTGAATACGTCAATGAAGGGAGGGATGTTGTTAAAAGGGAGAAAAGACGAATTGAAAGACTTATTAAAGGAGGCAGGGATTGGAGTAACAGAGGGAGACCAACAGTGAATAGAGGCTCGGGAATGCGGCCGAGCCAATCAGATGGTAGGattgacgatgacaatgatgacatCGATAGAATGGATTCAAAAACGAGACTAAACGAGCCGCGTCGTGCGCAGTATACAAAATCTGCCGATGATGATCGTGTGAATTTACTGGATGCTATGGAGCAGGATAGACCGACACAACCGCAAAGGAGTGTGGGATACACAACACTCGGGACTGCATCGCGCAGTGGTCCTCCGCGCAATCTCTTCGACGACTTTTAAAGAATGTTGAATAGCAATGTTAATTTGAATCTATTTATTATAATGTTTTCAATTAGGGTGATctgtattaaaaatttatagacGTGCCAGTTGTAAAGCTTTGACAAAGCATACTGACCATTTGTAGTTATGCTTTAATGGCAGTGCATAGTACGCGTGTAAGTACCGTACTATTGAGCTCCCCTCCTGGTGCGGAACTATTGAGATTATCatctcttttttatatttgaatcCGTTGGGCCACTGTTGTATATTTGGAAGCGTTGTATTCGTTCCTATTCAAATTGTATCCTACTGGTCGATTCATcattaacccccccccccaccccaccCCTAAACTCAATTAAAATGAGCTTGATGTGGCACTGCATGTGACCAATAAAGGAAAATCACATGTTTTAGGAAGTTAGAATCGTTGCAAAATACCGCAATGACTTTTGAAAAGGGAGTTAATGGCAATTCGTATACTGAACAGTTCACACTGCTCAGTAGAATGGCACTTATTTAGAAATGAAAACTTGGGTAAGATAAGAAGCTATTGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68DH5	G-protein coupled receptor-associated protein LMBRD2 OS=Homo sapiens OX=9606 GN=LMBRD2 PE=1 SV=1
Q5F3F5	G-protein coupled receptor-associated protein LMBRD2 OS=Gallus gallus OX=9031 GN=LMBRD2 PE=2 SV=1
Q8C561	G-protein coupled receptor-associated protein LMBRD2 OS=Mus musculus OX=10090 GN=Lmbrd2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006504 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04791 all species →	LMBR1	LMBR1-like membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051584 all species →	Family	GPCR-associated LMBR1 domain-containing protein	Interproscan
IPR006876 all species →	Family	LMBR1-like membrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21355 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000001322.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.