Gene detail

Detailed information of ENSSJYP00000001903.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_027036647.1, rab GTPase-binding effector protein 1-like [Pocillopora damicornis]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

ENSSJYT00000001973

ATGATGGAAGCCAATCAAGAGAAAGATTTCAGAGGGGAGTATGAGAAAATTCTCAAGCAAAAAGAGCAGCTAGAACATGAATTTGGACTGAAAAGAGCCAAATTTAAAAGCATGTTCCTTGAATGTGAATCTCAATTCAAGGATGAGAAAGCCAGGCGAGAAAGTGCTGAGATCAAGATCAAAGGGCTTGAAGCAGAAATAGAAAGCTTAAAATCAAACATAGAAGGTATTCAAGCTGCTGCTAAGTTATCAGAAGAAGCTAGGCATGAAGAGATAGCTGCCATGAAAGTGAAGCATGTTGAAGAAGTAACATCAATGGAACACATCTGGAGGGagTCAGTGAGAGAAGCAAGAGCTTCCACTGCCAAGCACTTTGAGGAAGAGTACAAGAGACTTACAGCTGCAAACCAAAAGCTGGAgcagcaaatgaaaattaaatcagAGGAAAAATCAGATGGTATTATGTCCATGGTGTCACAAGCTATAAAACGAGGAGCAAATGCTTCTCCTTCAAGCCAAGATGCCAAAGGAGAAAATTCAGCAGATGATGAACTTAGTGAAACAATGAAACAGGCACAAGAAAGTGTCGAAGCCTGGAGGTCGATAATCATGCCCCTTGAAGAGGAAATTTCGAGTTTGAAATCAAAGCTAAGAGATGCACACACAAGATTAAAGCAATACGAAGCTAAGGCTGCTAGGAGCTCAATGGAGGGTGAAACGTCTAATGAAGTACTAAGCAGTAAATTGCAAGAGATCCAAGGCTATCTTGATGCTGAAAGATCTTCTAGAACTGATTTGGAAATGTTTGTGGCTGTTCTTAATACTCAAAAAGGGGTCCTGCAAGAAGATGCAGATAAGTTGCGACAGGAGTTACATAATGTATGCAGGCTGcttgaacaagaaaaaacagatcacaGAGATTTAAAAGAAACCTGGAAAAAAGCTAATGAACAATTCATAGAGCAACAGACGTCTCTTTGTTGGGAAATAGAGAAGATGAGAGAACTTTTAACACCAGCACAGAACGAGCGACTTTCCAAAGAATACAGAAAACGAGACACACGGCCAGCTCATCCAATGAGAACACAATCTGAAGAACATTATACTGGGCCCAATTCACCTGatgatttaatcaaatttcatgATAGTCCAAAGAAACAAGAACCGAAGCCTGCTACTCCGAGCGATGTACACCTTGTGGAGAAGATGAATCCTTCATCCCCATCAAGTATAGACAGTGTTGATTATGGTTCTGATTATTCACCCAGTAAGATATCTATTGGTCGCGTAGGTAGTTTGGAAGAGGGTGAAGAAATAGAAGAAGATGTTGAgggaatgaaatttgataaggAACACATGATGAGAAAGTCGGCATCGAGCTCGGATATTAGTAAAGAACAAGGCATTCGTATCCCGTCACCAACCAGTAAATCGTTGTCACAAGGTGATGTTTCTTCAGTAATTGGGGCTTCTGGAGATGATGCTTGGGCTGTGATATCTTCGCCCACGGTTGCAGAACTGGAGAAGAAGTTACATTTGAACGAAACTGGATGGAGCACCATGAAGGAGTCCTCTGTTACTCACCCAACGTGTATGATGTGCCAAAATTACGAAAAACAACTACAACGCttgcaaaaagaatttttagatCTAAAGGATAAGAAAGATGCATTAATCacatttgcaaagaaagaaaagTCAGAACTACGTGCCGAGAAAGAAAGAGTTGAAAAGCTGGAGAAAAGTATTTGCGAAGCTTCAGAAGATGCACAGAAGCAGATTTGTATGCACtcagaaaaggaaaaagaacaGCAGAATATTATGGAACAAATTCAAAGGGAATTCATTTCAGTACAGGAAGATGTGCAGTATCACGTTATGAAACTTTCTGAAGATAGGGACAGAATGATGGCTGAGCTTGAATCTTTACGAGAAGAAAACATGAATCTCAAGGCCATTCAAGAAACACTGAGAAATGACCAACAGATGTCTCTGGAGCCAAAGAATGCTGCAGATGCAGAGGTTATGAAAAATAAGATGGAACAGATGAAAGTAAATGCATCATCGAACGAAGAACAGTTACGAAGCGAGaTAATGTTCCTCAAAGATCGTGTAATAGCAGAGCAGTTTGATAAAGAAAACACTGAACGAATACTTCAATCAGATTTAGATCAAGCTCGACAAGAAATAGCTATTTTAAAAGATCAAATCTCAATTCGTGACACAGGAAAACGAAAGGAGgAGAAAGACGGGGAGGAGGAGACAGCATCACCATAG

Transcript

ENSSJYT00000001973

GGCTGCCAAAACAAGTGACCGCTGGTATGACGAAACGCGAAGATAAGTATTAATAGCAAAccacatgaaaaatttgaaaatactaTGACATGAATCAATAGTGCAATGATGGAAGCCAATCAAGAGAAAGATTTCAGAGGGGAGTATGAGAAAATTCTCAAGCAAAAAGAGCAGCTAGAACATGAATTTGGACTGAAAAGAGCCAAATTTAAAAGCATGTTCCTTGAATGTGAATCTCAATTCAAGGATGAGAAAGCCAGGCGAGAAAGTGCTGAGATCAAGATCAAAGGGCTTGAAGCAGAAATAGAAAGCTTAAAATCAAACATAGAAGGTATTCAAGCTGCTGCTAAGTTATCAGAAGAAGCTAGGCATGAAGAGATAGCTGCCATGAAAGTGAAGCATGTTGAAGAAGTAACATCAATGGAACACATCTGGAGGGagTCAGTGAGAGAAGCAAGAGCTTCCACTGCCAAGCACTTTGAGGAAGAGTACAAGAGACTTACAGCTGCAAACCAAAAGCTGGAgcagcaaatgaaaattaaatcagAGGAAAAATCAGATGGTATTATGTCCATGGTGTCACAAGCTATAAAACGAGGAGCAAATGCTTCTCCTTCAAGCCAAGATGCCAAAGGAGAAAATTCAGCAGATGATGAACTTAGTGAAACAATGAAACAGGCACAAGAAAGTGTCGAAGCCTGGAGGTCGATAATCATGCCCCTTGAAGAGGAAATTTCGAGTTTGAAATCAAAGCTAAGAGATGCACACACAAGATTAAAGCAATACGAAGCTAAGGCTGCTAGGAGCTCAATGGAGGGTGAAACGTCTAATGAAGTACTAAGCAGTAAATTGCAAGAGATCCAAGGCTATCTTGATGCTGAAAGATCTTCTAGAACTGATTTGGAAATGTTTGTGGCTGTTCTTAATACTCAAAAAGGGGTCCTGCAAGAAGATGCAGATAAGTTGCGACAGGAGTTACATAATGTATGCAGGCTGcttgaacaagaaaaaacagatcacaGAGATTTAAAAGAAACCTGGAAAAAAGCTAATGAACAATTCATAGAGCAACAGACGTCTCTTTGTTGGGAAATAGAGAAGATGAGAGAACTTTTAACACCAGCACAGAACGAGCGACTTTCCAAAGAATACAGAAAACGAGACACACGGCCAGCTCATCCAATGAGAACACAATCTGAAGAACATTATACTGGGCCCAATTCACCTGatgatttaatcaaatttcatgATAGTCCAAAGAAACAAGAACCGAAGCCTGCTACTCCGAGCGATGTACACCTTGTGGAGAAGATGAATCCTTCATCCCCATCAAGTATAGACAGTGTTGATTATGGTTCTGATTATTCACCCAGTAAGATATCTATTGGTCGCGTAGGTAGTTTGGAAGAGGGTGAAGAAATAGAAGAAGATGTTGAgggaatgaaatttgataaggAACACATGATGAGAAAGTCGGCATCGAGCTCGGATATTAGTAAAGAACAAGGCATTCGTATCCCGTCACCAACCAGTAAATCGTTGTCACAAGGTGATGTTTCTTCAGTAATTGGGGCTTCTGGAGATGATGCTTGGGCTGTGATATCTTCGCCCACGGTTGCAGAACTGGAGAAGAAGTTACATTTGAACGAAACTGGATGGAGCACCATGAAGGAGTCCTCTGTTACTCACCCAACGTGTATGATGTGCCAAAATTACGAAAAACAACTACAACGCttgcaaaaagaatttttagatCTAAAGGATAAGAAAGATGCATTAATCacatttgcaaagaaagaaaagTCAGAACTACGTGCCGAGAAAGAAAGAGTTGAAAAGCTGGAGAAAAGTATTTGCGAAGCTTCAGAAGATGCACAGAAGCAGATTTGTATGCACtcagaaaaggaaaaagaacaGCAGAATATTATGGAACAAATTCAAAGGGAATTCATTTCAGTACAGGAAGATGTGCAGTATCACGTTATGAAACTTTCTGAAGATAGGGACAGAATGATGGCTGAGCTTGAATCTTTACGAGAAGAAAACATGAATCTCAAGGCCATTCAAGAAACACTGAGAAATGACCAACAGATGTCTCTGGAGCCAAAGAATGCTGCAGATGCAGAGGTTATGAAAAATAAGATGGAACAGATGAAAGTAAATGCATCATCGAACGAAGAACAGTTACGAAGCGAGaTAATGTTCCTCAAAGATCGTGTAATAGCAGAGCAGTTTGATAAAGAAAACACTGAACGAATACTTCAATCAGATTTAGATCAAGCTCGACAAGAAATAGCTATTTTAAAAGATCAAATCTCAATTCGTGACACAGGAAAACGAAAGGAGgAGAAAGACGGGGAGGAGGAGACAGCATCACCATAGAACTTGGTTGAAGGATACGGATGGCTTCTATGTCGCTTACGAGGATTCTTtaataaattatataaaagATACCcgctattttctttaaaatatatgaCAACTCATTAAGGGACAGTGTAATACTTATGCTGTCAAATAGGCCTAGCTGTAGAGCCAAATTAATTGTTAGATAGTAATAAATACCTTACATAGATAGAACAGAGTTATTCACTTCTCAGGTGCCTGCTCTAGCTCTTCTTCGGGAAGTCCTGCTTTGGACGTATGATTGAACTTCTAATTGAAAAGGACCTTGGAGATTACTGCaatcatttataaaaaaaattaagcactCGATTGCTAATTAGTTGTTAGTTAGTTCCATGAACTACTTAATTGACTAGtttgatatattttaattgataaacTATATCTTTAGGGTAATGAGACCCaatataaaaaacttttttttggctCTCACGACCGGTCATAGTGTAGTTGTACAATAGAAAttaatgcgtttggtcagacTGCAAGGGGTTTTGTAATTGATTAGATTGAAGCaaagaatctttaaaaatgttgTACTGCAAATAAATCAAGCGACGAAAACGTTAGTCTATCCAAGAAGCGACAAATTTGCGATCACAGAACCATATTGGCTCCAAGGATCAGAGGGTTGAAAAgtccctttttattttatcgaTAATAAGAGTAATCAATAGGGGGATACGACTAACTCTTTGATCAATTGGATATTTCTGAGTATATACAGGGAAGGTTGAGGATGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35551	Rab GTPase-binding effector protein 1 OS=Mus musculus OX=10090 GN=Rabep1 PE=1 SV=2
Q15276	Rab GTPase-binding effector protein 1 OS=Homo sapiens OX=9606 GN=RABEP1 PE=1 SV=2
O35550	Rab GTPase-binding effector protein 1 OS=Rattus norvegicus OX=10116 GN=Rabep1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004176 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03528 all species →	Rabaptin	Rabaptin	Coiled-coil	Interproscan
PF09311 all species →	Rab5-bind	Rabaptin-like protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018514 all species →	Domain	Rabaptin coiled-coil domain	Interproscan
IPR003914 all species →	Family	Rabaptin	Interproscan
IPR015390 all species →	Domain	Rabaptin, GTPase-Rab5 binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31179 all species →	RAB GTPASE-BINDING EFFECTOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000001903.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.