Gene detail

Detailed information of ENSSJYP00000002130.1 in Catostylus mosaicus

Genomic Location: :...
NR annotation: XP_047141222.1, SCF E3 ubiquitin ligase complex F-box protein grrA isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSSJYT00000002201

ATGTCGTCACAAGTCGTGAAGCAGCTTCAAAAGCTGCACGTTGAAGAGCGATCAGGTGGTCTTGAAGACTTGGTCAGCTTAGGCCCTACCAAGAGAGCTGATGATGGCCCCAAAACACCAGTGCGACAAAAACAATTGGAATGCCCGGGCCTTACAGAATCGATGATATTGAGAAAGGAGAAGGTTAAGGtagcagaaaatgaaaagtattATTACAGAAGCCCATGCCCAGAGAAGgagaatttgaaaaactttgccAAATCCCCCTCTAGGGGTGGTTCTGCTTTGCTCAAATCGTCTCTCGTTGATTCAGTTGCACAGTTTGTTACCAAAAGTGACATAGCAGGAGTAGGGAATTGTAAAGTGTTTGTTGGCAATATAAGCTACAGAGTTAAAGATAGAGAACTTAGGGAgtgctttgaaatgtttgGCAATGTAAAGCGTGCAAATGTTTGCAAGGACAAGAGAACCAAGAAATCAAGAGGgtTTGGCTTTGTGGTTTTTTCAAACAGAGAAGATGCAGAAGGAGCTATTTATGCCCCTGACCACCTCCTGACCTATGATGGAAGACTGCTCAAGGTGACATGGGCAGAGcgaaaaagaaaaggaaaaacaaaagaaaaatccCAAGCACCAAGTACAATTACCTTAGAGGTATTAGCAAGGTCTTATCttgaaaaagaagattttgGTGATTCGTCCTCACTAGAAGACTCAGAAGAAGATGGTCCAGAGGAATCTTTCATCGACCAACTGAATGACGATATTTTGCTGagaattttctcatttttggaattgaaagaaaaaattaaagttgaGAGAGTTTGCAAGCGATGGTACAATATCGCAAGGCAAAGTTGGAAATCACTGACGTCACTTAGCTTCAAAGGAATGTTCACTGCGTTTCAAGGCACTGGGGGCCTAACAGACAAAATAttggtttcaattttgaaaagaggCTGTTACAACTTACAGAAGCTTGATTTGTCTGGATCACCATACTTGCTGTCACCAGACAGTCTTTTCTGTATATGCAAAATTTgcactgaaatgaaatgtttaaatctATCCAACGTTGCAGTAAATAATCATAACTTGAAAGAGATTGGTTCAAAATGCACAGAAATTGAGACCCTTATCCTTGGTAGATGCAAAGATTTTGGTGAAAAGGGGCTGTGGTGGTTCTTAAAGGAAGCGAAGAACTTAAAGCATCTTGAAGTAACTGATAATGTTCGCGTTACTGGAAAGAGTTTATGGATGTTGTCAGACACTTGCCAAGTACTAAACTTGAATAGCTGTGTCAAGATTAGTGACGTTGCTTTAGAAAACATCAGCAAAAGAGCTCCAAATCTTCTGGATCTGAATATAAGCAATTGCCTACTTGTATCTGATGTTGGATTAACAAATATTTGCACTAACAACAAGAAGCTGcaaaaacttgttttttcagaagcaCGAAATGCAGtTACAGTCAACGGTCTTATGGCCATAGGACAGCTAACAGAGTTGGAATATTTGACTTTGTCTCAGAATCAAAGCTTAGATGATGATGTTATAATGTCTCTTGTGAGCAATTGTAAAAAACTAAGATTTTTGAACGTTGAAGCATGTCATGGCGCAGTTACAGATGTCGGCATTAAGTCATTATCAAATCTCGAACATTTAGAGGAACTGAATATAAGTTACTTGACAGAGATAACTGATGAAAGTTTACAACATTTAGCTGCAAATACTGGTCTTCGAGCTCTCACTTGCAGAGCTTGCACTAAACTAACAAATGAAGgcttgctttcattgctgTTTATTGGTGGTAGTTCTTTGGTTTCCATCGATCTAAGTGGCTGTTATTCAATAGATGACCGTATTTTGAATGATGCACAGCTAACGGAGAGAGATGAAAACTTGAAACAACTCAAAATTAATGTTGGAGGGACTTCGATGACGTTAGAAGGAGCCAAGGCGCTTGaggagaaaattaaaaattgtcatgtgtcatatgaGAAACGATACAACAGCAGATTGCGAAATGATTTCGATCCGACGTCTATGGcttcattCTATCCAAGCGATGAAGAAGATGACAGTCTGGATGATGACGAACCTGATCACCCCTTCATTGCCAAAGATTATTCGGTTCCTTCAGATGACTTGCACGATGACCATGTGTCGCAGCATTATCCAATAATTGATCTTGAAGAAGAGGAAGACTTCCTAGAGGCCGATGATCCTGCTTTACTTGATGAGCTGGAAGAACGGTTTATGTTTGATTAA

Transcript

ENSSJYT00000002201

aactttcaaaagattactAGTTTTGGAGGAACAGCTGTCGCCAAAGAAGAcgcaaaattgcaaattactTGAGAATCAGAATAAGTTTTGAGGGCATGCAGCTATCAATACGATGTAGGGGTATACACTAATGTCGTCACAAGTCGTGAAGCAGCTTCAAAAGCTGCACGTTGAAGAGCGATCAGGTGGTCTTGAAGACTTGGTCAGCTTAGGCCCTACCAAGAGAGCTGATGATGGCCCCAAAACACCAGTGCGACAAAAACAATTGGAATGCCCGGGCCTTACAGAATCGATGATATTGAGAAAGGAGAAGGTTAAGGtagcagaaaatgaaaagtattATTACAGAAGCCCATGCCCAGAGAAGgagaatttgaaaaactttgccAAATCCCCCTCTAGGGGTGGTTCTGCTTTGCTCAAATCGTCTCTCGTTGATTCAGTTGCACAGTTTGTTACCAAAAGTGACATAGCAGGAGTAGGGAATTGTAAAGTGTTTGTTGGCAATATAAGCTACAGAGTTAAAGATAGAGAACTTAGGGAgtgctttgaaatgtttgGCAATGTAAAGCGTGCAAATGTTTGCAAGGACAAGAGAACCAAGAAATCAAGAGGgtTTGGCTTTGTGGTTTTTTCAAACAGAGAAGATGCAGAAGGAGCTATTTATGCCCCTGACCACCTCCTGACCTATGATGGAAGACTGCTCAAGGTGACATGGGCAGAGcgaaaaagaaaaggaaaaacaaaagaaaaatccCAAGCACCAAGTACAATTACCTTAGAGGTATTAGCAAGGTCTTATCttgaaaaagaagattttgGTGATTCGTCCTCACTAGAAGACTCAGAAGAAGATGGTCCAGAGGAATCTTTCATCGACCAACTGAATGACGATATTTTGCTGagaattttctcatttttggaattgaaagaaaaaattaaagttgaGAGAGTTTGCAAGCGATGGTACAATATCGCAAGGCAAAGTTGGAAATCACTGACGTCACTTAGCTTCAAAGGAATGTTCACTGCGTTTCAAGGCACTGGGGGCCTAACAGACAAAATAttggtttcaattttgaaaagaggCTGTTACAACTTACAGAAGCTTGATTTGTCTGGATCACCATACTTGCTGTCACCAGACAGTCTTTTCTGTATATGCAAAATTTgcactgaaatgaaatgtttaaatctATCCAACGTTGCAGTAAATAATCATAACTTGAAAGAGATTGGTTCAAAATGCACAGAAATTGAGACCCTTATCCTTGGTAGATGCAAAGATTTTGGTGAAAAGGGGCTGTGGTGGTTCTTAAAGGAAGCGAAGAACTTAAAGCATCTTGAAGTAACTGATAATGTTCGCGTTACTGGAAAGAGTTTATGGATGTTGTCAGACACTTGCCAAGTACTAAACTTGAATAGCTGTGTCAAGATTAGTGACGTTGCTTTAGAAAACATCAGCAAAAGAGCTCCAAATCTTCTGGATCTGAATATAAGCAATTGCCTACTTGTATCTGATGTTGGATTAACAAATATTTGCACTAACAACAAGAAGCTGcaaaaacttgttttttcagaagcaCGAAATGCAGtTACAGTCAACGGTCTTATGGCCATAGGACAGCTAACAGAGTTGGAATATTTGACTTTGTCTCAGAATCAAAGCTTAGATGATGATGTTATAATGTCTCTTGTGAGCAATTGTAAAAAACTAAGATTTTTGAACGTTGAAGCATGTCATGGCGCAGTTACAGATGTCGGCATTAAGTCATTATCAAATCTCGAACATTTAGAGGAACTGAATATAAGTTACTTGACAGAGATAACTGATGAAAGTTTACAACATTTAGCTGCAAATACTGGTCTTCGAGCTCTCACTTGCAGAGCTTGCACTAAACTAACAAATGAAGgcttgctttcattgctgTTTATTGGTGGTAGTTCTTTGGTTTCCATCGATCTAAGTGGCTGTTATTCAATAGATGACCGTATTTTGAATGATGCACAGCTAACGGAGAGAGATGAAAACTTGAAACAACTCAAAATTAATGTTGGAGGGACTTCGATGACGTTAGAAGGAGCCAAGGCGCTTGaggagaaaattaaaaattgtcatgtgtcatatgaGAAACGATACAACAGCAGATTGCGAAATGATTTCGATCCGACGTCTATGGcttcattCTATCCAAGCGATGAAGAAGATGACAGTCTGGATGATGACGAACCTGATCACCCCTTCATTGCCAAAGATTATTCGGTTCCTTCAGATGACTTGCACGATGACCATGTGTCGCAGCATTATCCAATAATTGATCTTGAAGAAGAGGAAGACTTCCTAGAGGCCGATGATCCTGCTTTACTTGATGAGCTGGAAGAACGGTTTATGTTTGATTAAGATGGTTGAGTTTGTGATGAATTCAAACATTTCGTGGCTATGCGAAATTTCCGCAGTGAATTTTGCTTTCTCGGAACTGAATAACAAGCCACTTAGTAATGTTCCTTGTCAAGAAATGTGGTAGAAATAAATTCACGTATTTGAGCTTTATGCATTAAGAGATTTTGAGATTAGGAGGCAGTTCTGTAATAAGAAtaggaaatttcatactagttACCTATATTAAGTATCGTCTTACTGACATACGTACACCACTAGGGCTAAATGTGATAGGGATTGATCAAATACATCACTAGATCAGAAGGTGAACATGGCCTTAAAGAAGTTTTATTTACTGTTATCTCGCGTAAATATGACTATTTATCGAAAAAACGGATTATTTATTAATAATGATAGttataataaatgaaaataatacaaaatttgtATAGCGCTCCAAACTAATGTACTCAGGTGCGCTTAACAATTTACGGTTCGCAAAATTTTCgtttgaaaaagtaaaactcTAAAACCTAAAATTTAATACCTAAAACGAAATGTCACACGctcatataaaatttcatcagaATACTATTTGATAGGAgtgaaagaataaataaaacaatcaaaaatttcattttccataTGCTATCTTGAAATAATGTGATTTGAGGAGCTTTTTGAGGGATTCAAAATTGCtgcttttctttaaattttctggTAATGCATTTTGGTTGCATCGATAAAGTCTTCGATTTTTAGAGAGTCGTGTATGAATGACATTTCCATCATCAGTAATCCTAGACTTAATTAAGTATTTTGCGATGTTACTACTTGGAAATCAAGTATCTCTTATCAATGCTGAGTATCTTTTCGACCCAACGAGCGTCGTTGGTACTTTGGGTCTCTCTTTATTCTTCATTCTCTACTCTTCTTTCTTCAATATTCATTCTTCATTTTGTACTTCTCTTCGTGTATGTCTACTGttctatgaattttttttatcaaccgtaaattata

Protein

Uniprot

Gene family

Uniprot term	Description
Q09511	Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans OX=6239 GN=rsp-4 PE=3 SV=1
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2
O89086	RNA-binding protein 3 OS=Mus musculus OX=10090 GN=Rbm3 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan