Gene detail

Detailed information of ENSSJYP00000002372.1 in Catostylus mosaicus

Genomic Location: :...
NR annotation: XP_047133072.1, glutamate receptor ionotropic, NMDA 1-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSSJYT00000002448

TCGCTGTCGTCAGAAGTGAAGGAAGCCTTGTTTATCCTCTTTCGCCATCTTAATGGCGCAATGGTAGCTATCATTTCCAGCAACGAACTATGCAGTTTATCATTCTCAAAGCAAATTGTTAAAGAGCTTTCACAAAGGAACATTTTGCTTCCTACCAGCCAAAAAACAACAGTTTCAgagtttttcttttcagggGCGAATTTGAACATAGATGAAATCAGGTCTTCATTGAAACAGGTCAATGTATTAAAACCGAAAGTTATAATTCTGGTGTCTCCTGTGAGCGAAATATGTGTTTCAAAACAACACCTGTGGCCTCTCTTCAGCCATATTGGCATCACCCCGTTTCTTAACCGACAGAATGTGTCCTTGGATCGATGTGAagtatttttctcttttcaggTAGCTGCGACGCATCAGTTGCTTGGATACAACAACATATGGATAGTGCCAGGAATAAAAGATACGATTAATAAAAGCCTCGTTCCTATGCAAGTTATCGCCATAAGACGAACAATTGAATCCAGAGAGAGATCAATGCTGAGTAGTGACCAGATAATAATGGCTGTGaaatatggaaatgaaatgatgTCGAATTGGACGATTGTTTATATGAAGGACCAAAGAAGCCCTTACAAGTACTACACAAACAATGGAATTGTTCTCAGCCTATTTGCAAATGATGCACCGACAGCGCATTTTCGCGTAGTTACGATTATCGATGCGCCATTTACGATGGAAATGCCGTACCTTGTTGTAAACGAGGGTGGTATTCACCGTTGTGAGAGTGGTATAATTTGCCGACTGCCAGAATCTGTCAACCGTTCTGTAAATACCACTTCTAAATGGAGATATTCTTGTTGCATCGGCCATTCCATAGATTTGCTCAACATTTTGATGAAGCGGTTAAGCTTCTCTGTAGATCTGTACGTTGTAGAGGATGGTTTTTACGGCTCTCTTGTAAACGGTTCCTTCAATGGAATGATTGGCGACGTAGCAAGAGGGACAGCTGACATTGCAATTGCTGGATTGACAATAACATCGCTCAGGTCGACTGCAGTTGACTTTACATCACCTTTCATACGACAAGATGTTGGCATTGTGACGATGTCCAAGAAAAAAGAACTTGAGTTCATAAACTGGCAATTTGTGTATCCAGTCGACACAAGCGTGATTATAACCGTGTTTTTGGGAATTCTTCTTGGAACATTTCTAACGTATGTTATGGAAAACCAGGAAATCGTCCTCAAAAGGCTGGTGAACCCAAAAGAATTTCCACCGAGGTACTTTTGGCGTGAAGGCTTCACTTACTATTCTGGTCTGACGTTTCAAAGGGATCTTGGCGGAAAGAATCCAGCTGAATTTGGGAGTCGGGTTGTTGCGATAGGATTTGCATTTGCCATGTTGGTCATAATGACAACATATACAGCTGTACTCACTGCTACTAAAGTATCtgtttctattttttcactCAAGATGACTAACCCAACACCTGATTTCAAATTCGCCACAGTACCAAGCACGAGCATCGaaagtttattcaaaaatgctccGGATGAAAACTTTTTTCGAATGTATctcttcatgcaaaagtataACGTTAAAACAGTCGAAGAAGGAATCAAACAACTGAGATCTGGGTATGCGTTTATACACGAGTATCCATTTCTTCTGTACTTCCTTTCAAAGCAATCGAAATgtgaaatgcaaataacagGAGAACCGATAGGACAATCCGGATTCGGATTAGCCCTCAAAAAGGGATCCGTGTGGACTGATAGACTCTCATTTGAGATTCTAAAGCTAAAGGAATCGGGACAATTAATCGATTTAGACAAAAAGTGGCTTGCTACAGCGtgtttagaaaaaacaaattcaatgtttgctgCGGAAAGCCTCTCCTTGGAATATTTTGGTGGCCTCGTGCTTTTCGTATCGATTTCATTTGCTtcgatgttttttttgctGCCTTTGGAATATGCATATCGGAAATATCCAAGAAAACCAATCGATGCCATAGCAAACAGGCTCTCAAACTGGAAACACGCAAGAAGACAGAAGATGTCATTAAGGGCCAGGCCGAAACTGCAATCAATGTCGTCAGAGGTAAACTTCGCCAACATAGATATGGACCCAAGACCAATAACAATACTATAA

Transcript

ENSSJYT00000002448

Protein

Uniprot

Uniprot term	Description
Q8TCU5	Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens OX=9606 GN=GRIN3A PE=1 SV=2
Q05586	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens OX=9606 GN=GRIN1 PE=1 SV=1
Q5R1P0	Glutamate receptor ionotropic, NMDA 1 OS=Canis lupus familiaris OX=9615 GN=GRIN1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015683	Family	Ionotropic glutamate receptor	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05208	GRIN1; glutamate receptor ionotropic, NMDA 1	-	Ion channels	ko04040	deepkoala