Gene detail

Detailed information of ENSSJYP00000002480.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_047141686.1, replication protein A 70 kDa DNA-binding subunit [Hydra vulgaris]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27694	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens OX=9606 GN=RPA1 PE=1 SV=2
Q01588	Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis OX=8355 GN=rpa1 PE=1 SV=1
Q5ZJJ2	Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus OX=9031 GN=RPA1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004416 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16900 all species →	REPA_OB_2	Replication protein A OB domain	Domain	Interproscan
PF04057 all species →	Rep-A_N	Replication factor-A protein 1, N-terminal domain	Domain	Interproscan
PF08646 all species →	Rep_fac-A_C	Replication factor-A C terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR004591 all species →	Family	Replication factor A protein 1	Interproscan
IPR031657 all species →	Domain	Replication protein A, OB domain	Interproscan
IPR007199 all species →	Domain	Replication factor-A protein 1, N-terminal	Interproscan
IPR013955 all species →	Domain	Replication factor A, C-terminal	Interproscan
IPR047192 all species →	Domain	Replication factor A, C-terminal, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23273 all species →	REPLICATION FACTOR A 1, RFA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005662 all species →	Cellular Component	DNA replication factor A complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051321 all species →	Biological Process	meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000002480.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.