Gene detail

Detailed information of ENSSJYP00000003685.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: AGT42223.1, retinoid X receptor [Aurelia aurita]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000003812

AATCAACGCTGACTGGAACTAGGTATTTACTTACAAATCATTTGAACGCAAAAATGATGCCAGAATTAGAACTAAAGAACTCTGCAATGTgcTCCTTGAACATGGTAGATAGCTGTTTGTCCGACCCCCCTCCACTAGAAACCCTTGATTCATACAGCCCATTGTCTGGTGGGGGCAGCACCCCAGGAAGCTCATCAAGTTTGACCTTCTTCCCATCAAATTCGAGTCCAAGTTCAGCTGGAAGCGAAAGACAAGTGCTGCCCTGTTCGGTTTGTGGTGACAAGGCCTATGTGAAGCATTATGGAGTCATTGCATGCGAAGGCTGCAAAGGGTTTTTCAAGAGGTCGGTAAGAAACAGCAGAAAATATCAGTGTCTTGGCAACCAGCTTTGTGACATTGACAGAAAAACCAGAAACCGCTGTCAATATTGTAGATTTCAAAAATGCATTGAGGTTGGAATGAAACCTGAAgCCGTTCAAGATGAAGTGTtgagaaaggaaaagaaagaatcAGGAAAGAGAAAGGTATCGAGTGGTGCAAGCAGTAGCACACCGAAAGGAAGCCCTGTTGAAGTGACGTCATCACGAGTGGAGATGCCTCTAATACCCATTGATTCGATTGTTTCAGCGGAAAGCATGGTGGACCCAGCAATTCAAATGTTTGCAAACACAAGTGTGGACCCAATCAGACACGTTTGCCTTGCTGCTGATAAACAGTTGGCCTCTCTTGCGGAATGGGCAAAAAAGTTGCCATATTTTACCAGCCTCGATATCACGGATCAAGTTGTGTTACTTCAATGGAGTTGGCCTGAACTTTTGATTGGTGGATTTTGTCACCGCTCCTGCGCAGTCAAAGATGGCATACTCCTTGCCACAGGACTACATTTAACAAGAGATAATTTGAAGAAGGCGGGTGTAGGGGCTTTGATTGATAAGATTTTTGGCGAAGTTATTGAGAAACTTCAGGATATGCAATTGGATAGAGCTGAATGGGGTTGTATTCGAGCTGTTATGCTTTTCTCACCTGATGCGAAAGGGTTGAAAGACGTGCAGCAAGTTGAGACATATAGAGAAATGTACAGCGCAACGTTAGAAGACTATATGAAGAGAAGCAAACCAGATCAACCTGATAGATTCACAAAACTAATACTTCGTGTACCTGCACTGAAATCAATAGGGTTGCAAGCATTAGAACATCTTTACTTCTTTAAACTTATCGGTGATGTGCCAATGGACACATTTTTGCTTGACATGTTGGAagttaatcaatagatcacatatttcttttcatctgaagtattatttaatatttagcCACATAAGATTGTCAGCCAATTGAGATGCGTTGCAGCCCATGCCATTTTTTATCTCCTCTAAATTTGGCAAATGTATCCCCGGGCCTGAGTTTTTAGCACTGCAATAGGAGCGATTGTTCATTTGAAATGCTGACAATACGTTCTGAAAATTTCGATTTCATTAATGAAGAAGATGTTAGAGTAACAAAGCTTCTATCATCAGATATAATGGCGTTTTCAGAAAACAGGTaattaaagtaaagaactTTTATCAATGCTTTTGACGTGATTGGTTTTAATAATCAACATAACCAATTAAAAGAGATTTGCCTCTTGACTTGCAATTGTGAAAGATGAAACTGCATTTGatatcatatatattttattgagaAATCCCTTAAAATCCTGTTAAATATAGTCTCGTTTTTTATCTATGCTTTAGACACAAAAAATATCTTCGATTGGCTTACAAACTTAATCTTAGAAATTTAGTTAAATAAAAGTAGAATATGAAGGCATAAAATTGGTTGGCACTTATGTAACAAAGCACAAACATCCCTTGTCAGATTTACATCTTCAATACATctggttttatcgtattttaTGTGAATTACAGTGTATTCTTAAACttattaaaatttacattttcaattttttaattgaagttAGTTCCCCTCAAACAAGACTTACCTTTTTGGTGAGAATCTTCAATTGTATGCGTTGGTccaaaattcatgaaaaagtaaagtta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8T5C6	Retinoic acid receptor RXR OS=Biomphalaria glabrata OX=6526 GN=RXR PE=1 SV=1
Q5I7G2	Retinoic acid receptor RXR OS=Lymnaea stagnalis OX=6523 GN=RXR PE=1 SV=1
A2T929	Retinoic acid receptor RXR-alpha-A OS=Danio rerio OX=7955 GN=rxraa PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000308 (this species only)
Transcription factor family	ESR-like · all TF in this species
Transcription factor family	Miscellaneous · all TF in this species
Transcription factor family	NGFIB-like · all TF in this species
Transcription factor family	RXR-like · all TF in this species
Transcription factor family	SF-like · all TF in this species
Transcription factor family	THR-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00105 all species →	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan
PF00104 all species →	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016355 all species →	Family	Nuclear hormone receptor family 5-like	Interproscan
IPR035500 all species →	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR013088 all species →	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR001723 all species →	Family	Nuclear hormone receptor	Interproscan
IPR001628 all species →	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR000536 all species →	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR000003 all species →	Family	Retinoid X receptor/HNF4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24086 all species →	NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004879 all species →	Molecular Function	nuclear receptor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009755 all species →	Biological Process	hormone-mediated signaling pathway	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan
GO:0090575 all species →	Cellular Component	RNA polymerase II transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003707 all species →	Molecular Function	nuclear steroid receptor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08524	RXRA, NR2B1; retinoid X receptor alpha	-	Nuclear receptors	ko03310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.