Genomic Location: not available for this species
NR annotation: AGT42223.1, retinoid X receptor [Aurelia aurita]
Species Catostylus mosaicus · all data for this species · gene families
| CDS |
| ENSSJYT00000003817 |
| Transcript |
| ENSSJYT00000003817 |
| Protein |
| ENSSJYP00000003690.1 |
| UniProt accession | Description |
|---|---|
| Q8T5C6 | Retinoic acid receptor RXR OS=Biomphalaria glabrata OX=6526 GN=RXR PE=1 SV=1 |
| Q5I7G2 | Retinoic acid receptor RXR OS=Lymnaea stagnalis OX=6523 GN=RXR PE=1 SV=1 |
| A2T929 | Retinoic acid receptor RXR-alpha-A OS=Danio rerio OX=7955 GN=rxraa PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000308 (this species only) |
| Transcription factor family | ESR-like · all TF in this species |
| Transcription factor family | Miscellaneous · all TF in this species |
| Transcription factor family | NGFIB-like · all TF in this species |
| Transcription factor family | RXR-like · all TF in this species |
| Transcription factor family | SF-like · all TF in this species |
| Transcription factor family | THR-like · all TF in this species |
| Transcription factor family | GCNF-like · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00104 all species → | Hormone_recep | Ligand-binding domain of nuclear hormone receptor | Domain | Interproscan |
| PF00105 all species → | zf-C4 | Zinc finger, C4 type (two domains) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001628 all species → | Domain | Zinc finger, nuclear hormone receptor-type | Interproscan |
| IPR035500 all species → | Homologous_superfamily | Nuclear hormone receptor-like domain superfamily | Interproscan |
| IPR016355 all species → | Family | Nuclear hormone receptor family 5-like | Interproscan |
| IPR000536 all species → | Domain | Nuclear hormone receptor, ligand-binding domain | Interproscan |
| IPR013088 all species → | Homologous_superfamily | Zinc finger, NHR/GATA-type | Interproscan |
| IPR000003 all species → | Family | Retinoid X receptor/HNF4 | Interproscan |
| IPR001723 all species → | Family | Nuclear hormone receptor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24086 all species → | NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0004879 all species → | Molecular Function | nuclear receptor activity | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0009755 all species → | Biological Process | hormone-mediated signaling pathway | Interproscan |
| GO:0009888 all species → | Biological Process | tissue development | Interproscan |
| GO:0090575 all species → | Cellular Component | RNA polymerase II transcription regulator complex | Interproscan |
| GO:0003707 all species → | Molecular Function | nuclear steroid receptor activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08524 | RXRA, NR2B1; retinoid X receptor alpha | - | Nuclear receptors | ko03310 | deepkoala |
