Gene detail

Detailed information of ENSSJYP00000003748.1 in Catostylus mosaicus

Genomic Location: :...
NR annotation: CAH3130360.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSJYT00000003877

GTGGAATATGTATTGAAATGCGACATGTCAGCTTTGCAGAGAGTGCTGTATTCACACATGCATAGAAAAGGTGTTGTTTTGACTGATGGCTCTGAGAAAGACAAAAAGGGTCGTGTTGGCACAAAGACAATGATGAACACCATTATGCAGCTGAGAAAGATTTGTAACCACCCGTTCATGTTTCAGCACATCGAGGAGGCTGTTGGAGAACAAATGGGGTACCCATCTGGTGTAGTGACCGGACCAGAGCTGTACAGAGTTTCTGGCAAGTTTGACTTGTTGGACAGAATTTTACCAAAGTTCAAAAAGCACGGTCACAGATGCTTGGTTTTCTGCCAAATGACGTCACTAATGACAATTATGGAAGACTATTTGAATTGGAGAGGATTCCCCTACCTTCGTCTTGATGGTACGACTAAAGCTGAGGATAGAGGAGATTTATTGGCACTATTCAATGATCCATCATCTCCTTATTTCCTCTTCTTGTTGAGTACACGTGCTGGTGGATTGGGTCTGAATCTTCAAGCTGCTGATACTGTTATTATCTTTGACAGTGACTGGAATCCTCATCAGGATTTGCAAGCACAAGATCGGGCACATCGTATCGGCCAACAAAATGAAGTCAGGGTGTTGAGATTGATGACAGTCAATTCTGTTGAAGAAAAGATCTTGGCTGCTGCCAGATACAAGCTTAATGTCGATTCCAAGGTCATCCAAGCTGGTATGTTCAATCAGAATTCCACAAGCAGTGAAAGACGTGCATTCTTGTATGCCTTGCTGGAAAGCGATACCCTTGAAGATGAGGAAGAAAGTGAGGTTCCTGATGATGAAACAGTGAATCAAATGATTGCCAGAAGTGAAGAAGAGTTTGAAATGTATCAGAGAATGGATCTTGAACGAAAGAGAAACGAGCCAAGGGAGCCTGGATCTTTGCGAAGAAAACCGAGATTGATTCAAGATTCTGAATTGCCAAAATGGTTGcttaaaaatgaagatgagaTTGACCAGCTGACCtgggaagaagaaaaagacaaGATGTTCAGACTtggaaagagagaaagaaaggATGTTGACTACAGCGACAATTTAACAGACAAACAATTCTTAAAGGCTATTGAGGAGGGCACATTGGAAGATTTTGAAGAGAGACAACGGACCAAGACCAGAGGCAAAAAACGCAAGAAGGACGATGAAGAAACCAGCAGTGATATCAAGGCAAAGAGAAAGAGAGGCAGACCTCCTGCGGcCAAATTGGATCCAAACCCACCAGATCtgacaaagaaaatgaaaacattgatgaaaCGCGTTTGCAAATATACTGACAGTGACAGTCGGGTTCTGGCAGAGCCATTTGTAACTTTACCAACAAGAAAAGAGCTGCCAGATTATTATCAACTGATTAAGTTGCCAATTGACATCAGAAAAATTAAGGAGCGTATAAGAAACCACAAATATAGAAACATAAATGATATGGAAGAGGATTTTATGCAAATGTGTCGAAATGCTCAAATGTACAATGTCGAGGGATCTTTGATATACGAAGACTCTATAACTCTCCAGtCAATTTTCACGGAATACCGCCGCAAAGTTGAATCTGGTGAAGAGGATGTGAGAggaaataatgatgatGTAGATGAAGATTCAGACAAGGAAAGCAGCATTTCTGAAGTGTCCAAGACGAACAAAGGAGACGGAAAAGGAAAGAGGAGAAAGTCAAAGAACAAAGGAAAGGGTGAAAATGATAGAGAGGAAGGGATTGCTTCTGATAATGATGCTTCAGATGATgACGATGGATCCGAGCAAGACTTTGAAGACACTCCCTTGTCATCTGCTGTCTCCTCGCCAGCCTCATCCACAATGTcgtcaaaaaagaaataataactTTATTAAACTTCTTAATTGATTAACTACATTATTTAGGCTTTCTATAAACATAACACTTAGAAATACATAAAAAGGATTGGCATGTTGTAGGGGATTTGTGGTAATTTCATTTCCTCTTATTCAGCATGGATTTGCTTTCTATTATTTGCTGTAATATCCAGGCACCCACCTTCAGGGGGTTAGGGGCGTGCACCCTTCTCCTCAATTTTATaatcttcttgcagggcaaaagtaGCCGTTAGAGGGCACAAATGACCGATTAGGGGCGCTTTCGAGGACCAAAGGAATTTTGCCCcaatttttggcaagaaaATAGTGAATTTTTCAGGACACGTGTCGTTACCCTACTAACGAAAAGCATAAAGTGAGCCCCCTGAGAGCCTCCAATGATAACGTGAATATTAAGTTTTTGCAACGCTATTTTGAAGATAGGATGACTTCGCTTGAATGCTGTTTTCTTATTGATCACGTGAATATTATGTGGTGACATCGACAAAAACCACTTCCAACCGTCGGTCAGCTTTTTAAAATAAGTCCCTCATTTTTATCACATCCATTTTATTATTTCCAAAGTTGAAGCCAATTCTATTCTCCATACAGGAAAAAGGGCCCACCTGGGCAAACATTAAGCCCTAAAGAGACTCACCCTTGAAAATATAGTTTTAAGCAGACGAAGACCCCACAAACCATCTCTAATTACGCCCCTGGGTGTGGCAATCCACCAGAGATTCATTTTTTGCATGTTGTTGGGGAGTTTAAGCCCTTTTGGTTAGTGAATTAATGCAGTAGACATGTAGTAAGTTGagtatttttgttttccatCTTAACTGGATGACTAACAATCTTAG

Protein

Uniprot

Uniprot term	Description
Q3TKT4	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Mus musculus OX=10090 GN=Smarca4 PE=1 SV=1
Q8K1P7	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Rattus norvegicus OX=10116 GN=Smarca4 PE=1 SV=1
A7Z019	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Bos taurus OX=9913 GN=SMARCA4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14619	SnAC	Snf2-ATP coupling, chromatin remodelling complex	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00439	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan
IPR029295	Domain	Snf2, ATP coupling domain	Interproscan
IPR001487	Domain	Bromodomain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan