Gene detail

Detailed information of ENSSJYP00000005140.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: KAG5265323.1, hypothetical protein AALO_G00240990 [Alosa alosa]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

ENSSJYT00000005315

ATGATGCAAATGAACATGTCGCACGTAATGGGAACTGGATTTTCAGTTGCACTTTGGTTGATGTTCTTCTGCACATTATCCCAAGGAAATGCACTGACATGTGATCACAATATGTTCGCTTGTGCGAGTGGAGATAAATGCATCACAAATTTATGGAAATGTGATGGCGAGCATGACTGCGTTGATGGGAGTGACGAAGCCAACTGCGGTTCAATGAATCCATCATGTAGCAAAACACAGTTCCAATGTACAACTGGCCGTTGCCTACATATGAATTGGCGCTGCGATGGCGAAAGGGATTGTACAGACGGAAGTGATGAAGCGAATTGTGAGAAGCCACGTGAGAAATGTGCTGCAGAAATGATTCGTTGCGACAATGGAAGATGTTTATCACCTGTATATGTttgtgatggtgatgatgattgtggaGACAGAAGTGATGAAAAGAATTGCAGTAGAACATGCAGTTCATTACATTTTCAATGTGCTATTGATGATCGGTGTATTTTGAACACTTGGAGATGTGATGGCGATCGGGATTGTGCTGATGGGACTGATGAGAAAAATTGCTCAAGTGCAACtacaaaaaattgccaaaaaggATACTTCAAATGTGGCAATGGACGGTGTATCCCGTCTAATTTTTTATGCGATGGAGACAAAGACTGTATCGATGGAAGTGATGAAAGAAATTGTGGAAAAACGACATGCCCTTCGAAGAGTTTTACATGTGGCGATGGTAAATGCATAATGCCTGGATGGCGGTGCGATGGTGAAAATGATTGCATCGATGGAATGGATGAAAGaaattGCACCCGCAATAAATCATGCCCCAAAAATCATTTCTTGTGTAAAACTGTCAGCAATAATACCCATTTATGCATCAAAAAGCAACTGGTTTGCAATGGTGTCATGGATTGCTTCGATGCAAGTGATGAAGATAATTGTTCCATGCCAAaCAAAACAATCGATTGTATATCGTATGATTCTAATGGATGTAACCGAGAAAACtgtaaaacaacaacaaaaaaatgtgGAAGTTGCTATGCTTTATGGAGATATGAATTTGGtgaaaagaaagttttatcGCAAGGTTGTTGGAGTAAATGTAGCTCAGGAGATAAATGCATTGAACACTCAAAATCGAAGCCTTATCGAAAAACTTTGAAGTTTTGTTGTTGCACTGGAAGTAACTGTAACGATATTAAAAACACAACTCAAGCAAAATGCCCAGAATATCGCTGTAAAGATGGCACTTGTGTTAGTGCCAATTCTCGTTGTGATGGAAAACTAGATTGCCCAAATGGAGATGATGAAGATTCATGTGagAAAGAATGCTTGATGAACTTAGGCATAAAATCGGTCAGTTCTCCACAAGACTCGACTTCCCTGAAACCGTTGAAAAGCTTCAATGTGTTCTTAAACAACAGTCGAAGTGCGTGGTGTAGTAGGAAAAGCAAAGGCCGTCAATGGATAACAATTGATCTTGGAATGGTTCGAAGTGTTCAGGCATTGACAACTCTTGGTTACCCAGTTGGTACCGAGCCcagctttgcaaattttacacTGCAATTGGGTCGTGAAACTGAagtattcttaaatttcacagAAAATGGTAAAACCAagGTCTTCTTTGGGAATGAAAACCCGTTAATTCAAGTTAAGCATGTTTTGCCTCGACTCGTTAAAGCAAGGTACATCAAAATACTTCCCAAGGCATTCGGTGAAAAGAACTTTGCTTGTTTGCGAGTGGCAATTCTTGGATGTTCCAAATCTATTATACCAGAGACAACGATTAACAAAAGGGTGGTCACCCCAGACATTGGACAGGATGGCTCAGCTTATTGTACAGTACGTTCTCAGCGAGATTACAACTCAACTGTTCGATGGCTTATGAAGGGAAAAAGCGGTTCATTTGAGCCattaacatcaggacataacCACATTATAGAAGAAAAACAGCTCAAATTGGAGACaaagtttgatttatttatggAGAGACAAGTGCATTTGCGATATCAATACAACTTTGAttatataaaagaaatgtttaattGTCAGCACAACAGGATTAATGACACATTTATCTGCTCATCTGAATACAAATGCATTGCAGAATATCTTCCATTGGAGTCTGGACCTCACTCTTTTTCCAAAGTTTccataaaatatcattttgGAAAGCGAGTAAAGATGGTTAAGTTGAAAGTGAGAAATGTGACAGATAGTGGAGTAACGGCTGAATGGGATGTGCATCCTAAACCGAATTATCAGTTATCAGTGAAGTCAATTTTATGGCTAAGGAAAATGCTAGATGGTGGAGGCAAACCACTGATTGTAAAATTAGATTCAACGCCTTTTCAATTGAAATCATTGGCTCCATATCGTCAATACCGACTTCAACTCCATATTCCTCCCATGGTATTACCTGGCATCAAAAACACCATACGCAGTAACCTAGTTATATTCACAACTCTTGTCAAAAATCCTGGTGCCCCTCTCTCAAGATTAACGGCTGTTCACATTGGCAGCAATTTTGCTGTTATTCACTGCAAGCCACCTGCTAGAGAAAAGTGCAATGGTCCAATCGATGGTTTTGttttaagaaagaaaagaattgcAAATGGAGGGACAACAGTGAACGAGAAAAGCACAGAAATTATAGTAACTGGGAAGGAGATAGTGAAAATTGATGACCTGAAACCACTGTCAACATATAACATAACAGTTACtgcatttaatttattaaatgGAGTAAAACTAGAAAGTGAAGCAAAAAGAATTACATTCAATACAttaaatgaaaAGCCAACTTTGACACCAAATAGAGTTGAGGCAATATTTGAGCCAACAAGATGGATCAACATTAAGTGGGACGTTCCTACCGATGCTCCAATAGTAATATTGATGGGATTTCAGATACGAGTTCATGAAATAACGAAACAATCAATGAGAAAAAGGAGAGaagcaaatacaaatacaaagatttttaaagttgacaaaactaaaagaaatgaaaaaatagttgTATCACCAAATTCAGAGTTTTGTATGGTTCAAGTTGCGATGTATTCAGGTGCTGGTGTTGGACCATTCTCGCAACCAATCacagtaaaaattgaaaaattgaagccAACTACCCAGGTGACTacagaaacagaaaaaaagaaaacaacaaaaaaaaccaaagcAATAAAAGTCACATCGAAATCAGTGGTAACTACAGCGTGGGTTTCTTCgcaaatgacaaaatcaaaacCAAATAAAGTGGGGTCAAAAGATACAGcaaaaatgaaagaagaaaagcgACATTTTTTTACAGAATTTATTGTGGCAATTGTTGTGgctgtttgtttgttgattATTGTTATAATTGCTGCATTTAAAACACACCAATATAGAAAGAAAGCAAACTGGAATAACAAAGGTTACAACGGTTACAATTGCGAAGGAAGAAAAATGGAGCCATTTTTATTGGACGACGAGGGCGAAAATTGGAATAGCGAAGGAGTATCTACGGATTCACTTGAATATGCTAAAGATAAAACAGACCTTTCTAGTTTGTAA

Transcript

ENSSJYT00000005315

GGATTATTAGTCACAGGAAGTACGTTGTTGAAGAAAGGACAGCATTTGAACGGACAGTGTTTACGTAGTTACAGCATTGCCTTCCAGACATTTGAGATGATGCCTGTGTTATCGTCTCAtgttctgtaaaaacattttgctCTTTAGCACATAACTCAGATAAAGAGCAAGTTAATGATGCAAATGAACATGTCGCACGTAATGGGAACTGGATTTTCAGTTGCACTTTGGTTGATGTTCTTCTGCACATTATCCCAAGGAAATGCACTGACATGTGATCACAATATGTTCGCTTGTGCGAGTGGAGATAAATGCATCACAAATTTATGGAAATGTGATGGCGAGCATGACTGCGTTGATGGGAGTGACGAAGCCAACTGCGGTTCAATGAATCCATCATGTAGCAAAACACAGTTCCAATGTACAACTGGCCGTTGCCTACATATGAATTGGCGCTGCGATGGCGAAAGGGATTGTACAGACGGAAGTGATGAAGCGAATTGTGAGAAGCCACGTGAGAAATGTGCTGCAGAAATGATTCGTTGCGACAATGGAAGATGTTTATCACCTGTATATGTttgtgatggtgatgatgattgtggaGACAGAAGTGATGAAAAGAATTGCAGTAGAACATGCAGTTCATTACATTTTCAATGTGCTATTGATGATCGGTGTATTTTGAACACTTGGAGATGTGATGGCGATCGGGATTGTGCTGATGGGACTGATGAGAAAAATTGCTCAAGTGCAACtacaaaaaattgccaaaaaggATACTTCAAATGTGGCAATGGACGGTGTATCCCGTCTAATTTTTTATGCGATGGAGACAAAGACTGTATCGATGGAAGTGATGAAAGAAATTGTGGAAAAACGACATGCCCTTCGAAGAGTTTTACATGTGGCGATGGTAAATGCATAATGCCTGGATGGCGGTGCGATGGTGAAAATGATTGCATCGATGGAATGGATGAAAGaaattGCACCCGCAATAAATCATGCCCCAAAAATCATTTCTTGTGTAAAACTGTCAGCAATAATACCCATTTATGCATCAAAAAGCAACTGGTTTGCAATGGTGTCATGGATTGCTTCGATGCAAGTGATGAAGATAATTGTTCCATGCCAAaCAAAACAATCGATTGTATATCGTATGATTCTAATGGATGTAACCGAGAAAACtgtaaaacaacaacaaaaaaatgtgGAAGTTGCTATGCTTTATGGAGATATGAATTTGGtgaaaagaaagttttatcGCAAGGTTGTTGGAGTAAATGTAGCTCAGGAGATAAATGCATTGAACACTCAAAATCGAAGCCTTATCGAAAAACTTTGAAGTTTTGTTGTTGCACTGGAAGTAACTGTAACGATATTAAAAACACAACTCAAGCAAAATGCCCAGAATATCGCTGTAAAGATGGCACTTGTGTTAGTGCCAATTCTCGTTGTGATGGAAAACTAGATTGCCCAAATGGAGATGATGAAGATTCATGTGagAAAGAATGCTTGATGAACTTAGGCATAAAATCGGTCAGTTCTCCACAAGACTCGACTTCCCTGAAACCGTTGAAAAGCTTCAATGTGTTCTTAAACAACAGTCGAAGTGCGTGGTGTAGTAGGAAAAGCAAAGGCCGTCAATGGATAACAATTGATCTTGGAATGGTTCGAAGTGTTCAGGCATTGACAACTCTTGGTTACCCAGTTGGTACCGAGCCcagctttgcaaattttacacTGCAATTGGGTCGTGAAACTGAagtattcttaaatttcacagAAAATGGTAAAACCAagGTCTTCTTTGGGAATGAAAACCCGTTAATTCAAGTTAAGCATGTTTTGCCTCGACTCGTTAAAGCAAGGTACATCAAAATACTTCCCAAGGCATTCGGTGAAAAGAACTTTGCTTGTTTGCGAGTGGCAATTCTTGGATGTTCCAAATCTATTATACCAGAGACAACGATTAACAAAAGGGTGGTCACCCCAGACATTGGACAGGATGGCTCAGCTTATTGTACAGTACGTTCTCAGCGAGATTACAACTCAACTGTTCGATGGCTTATGAAGGGAAAAAGCGGTTCATTTGAGCCattaacatcaggacataacCACATTATAGAAGAAAAACAGCTCAAATTGGAGACaaagtttgatttatttatggAGAGACAAGTGCATTTGCGATATCAATACAACTTTGAttatataaaagaaatgtttaattGTCAGCACAACAGGATTAATGACACATTTATCTGCTCATCTGAATACAAATGCATTGCAGAATATCTTCCATTGGAGTCTGGACCTCACTCTTTTTCCAAAGTTTccataaaatatcattttgGAAAGCGAGTAAAGATGGTTAAGTTGAAAGTGAGAAATGTGACAGATAGTGGAGTAACGGCTGAATGGGATGTGCATCCTAAACCGAATTATCAGTTATCAGTGAAGTCAATTTTATGGCTAAGGAAAATGCTAGATGGTGGAGGCAAACCACTGATTGTAAAATTAGATTCAACGCCTTTTCAATTGAAATCATTGGCTCCATATCGTCAATACCGACTTCAACTCCATATTCCTCCCATGGTATTACCTGGCATCAAAAACACCATACGCAGTAACCTAGTTATATTCACAACTCTTGTCAAAAATCCTGGTGCCCCTCTCTCAAGATTAACGGCTGTTCACATTGGCAGCAATTTTGCTGTTATTCACTGCAAGCCACCTGCTAGAGAAAAGTGCAATGGTCCAATCGATGGTTTTGttttaagaaagaaaagaattgcAAATGGAGGGACAACAGTGAACGAGAAAAGCACAGAAATTATAGTAACTGGGAAGGAGATAGTGAAAATTGATGACCTGAAACCACTGTCAACATATAACATAACAGTTACtgcatttaatttattaaatgGAGTAAAACTAGAAAGTGAAGCAAAAAGAATTACATTCAATACAttaaatgaaaAGCCAACTTTGACACCAAATAGAGTTGAGGCAATATTTGAGCCAACAAGATGGATCAACATTAAGTGGGACGTTCCTACCGATGCTCCAATAGTAATATTGATGGGATTTCAGATACGAGTTCATGAAATAACGAAACAATCAATGAGAAAAAGGAGAGaagcaaatacaaatacaaagatttttaaagttgacaaaactaaaagaaatgaaaaaatagttgTATCACCAAATTCAGAGTTTTGTATGGTTCAAGTTGCGATGTATTCAGGTGCTGGTGTTGGACCATTCTCGCAACCAATCacagtaaaaattgaaaaattgaagccAACTACCCAGGTGACTacagaaacagaaaaaaagaaaacaacaaaaaaaaccaaagcAATAAAAGTCACATCGAAATCAGTGGTAACTACAGCGTGGGTTTCTTCgcaaatgacaaaatcaaaacCAAATAAAGTGGGGTCAAAAGATACAGcaaaaatgaaagaagaaaagcgACATTTTTTTACAGAATTTATTGTGGCAATTGTTGTGgctgtttgtttgttgattATTGTTATAATTGCTGCATTTAAAACACACCAATATAGAAAGAAAGCAAACTGGAATAACAAAGGTTACAACGGTTACAATTGCGAAGGAAGAAAAATGGAGCCATTTTTATTGGACGACGAGGGCGAAAATTGGAATAGCGAAGGAGTATCTACGGATTCACTTGAATATGCTAAAGATAAAACAGACCTTTCTAGTTTGTAATAAATGCAAGGTTAAACGATACACCTGTGATACAGAGTTGAAAAACAGTATGCTTTTAATGTATagacaacaatgcaaaatagtatgaaacattattaaagataataaatttattaacCCTTGTCATGTTGAAGTGAAATAGAGGGGTGATGCATTTGTTATAACACAAACAAAGTAGGAAAACATCGCAGCTTTTCTTAAATAGGTGTCTGACTTAGTTTGTAAACAAGGCTCGTGGTatctaataaaaattgaaacatctTTTAGCAAAAGACAATCATCTGGCTTCAgaaaacaacatgaaaaacaattacaaaaagcatacaaatatgatttattctattctaattTGATTAAGCGAGCTCTACCACTGTAGATGGAGGCTACTACTTACGTTTTCTTACTTTGTAATTGTGTATCTACAATATTTTAATACGTATCCAACAATATCATattaaagaatttattttttttataaaaaatcaatgtcttgtCTTTGTTTATCCATCATTGCAATTCgtccttgcatttttatcaagccTTGTTGTGTAGTTACTTAGATGagcattaatttttgaaaaaatggattattctaaatacaataaatcacacTTTGATACATTGATTCACAATTTAAATTGGTTCAACGACAGTAAAATAGTTTTTGTTAGGGTGTCCAAGGCTTAGCCTGAATTCTGTACAAATATGAGCCGACTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35953	Very low-density lipoprotein receptor OS=Oryctolagus cuniculus OX=9986 GN=VLDLR PE=2 SV=1
P98156	Very low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Vldlr PE=1 SV=1
P98166	Very low-density lipoprotein receptor OS=Rattus norvegicus OX=10116 GN=Vldlr PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0019127 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR050685 all species →	Family	Low-density lipoprotein receptor	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270 all species →	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000005140.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.