Gene detail

Detailed information of ENSSJYP00000005443.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_047136385.1, serine hydroxymethyltransferase, mitochondrial [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000005626

aatTCATCTATATacgtatttgaaaacaaaatcttggATCTTTGCTGTTTGGAACATAGAATTGCCATTTTCACAACTGTCCATATTTGCTGTCCTTGTGAGGTACCACTGTTCATATTCTGCCGCTGCTCCCAACCAACCTCGGTTGACCACGAGCTGCACGTTGTTGTGATCatctgatcacatgaaagttACGTTTGTTCATTAACCCTACGGGTTATCATTGCTACGAGTCACAACTTGCTTTGCCTATTCACTAAAAGAAACATGCTTTCGACAACGGGACGTGCACTGAGAAAGCTTTTTGGTAACTGGCCAAAATCATCTCATTCACTACTGTCATATGCAAGATGCACACAGAGGTGTCTTTGGACTGGCAGGGAATCGCTTGAAGATGATGATCCTGAAATGTTTCAACTTATAAAGCAGGAAAAGAGAAGACAGATAGAAGGACTTGAACTTATAGCATCTGAAaatttctGTAGCAAAGCTGCATTAGAAACACTAGGGACATGtttgaataataaatattCAGAAGGATACCCAGGAGCCAGGTATTATGCTggaaatgaatttattgaCCAAATTGAGCTGCTGGTGCAGAAAAGGGCTTTGGATGCATATAGACTGGATCCAGAAAAATGGGGGGTTAATGTTCAAGTTTTCTCTGgTGCTCCAGCTAATTTTGCGATCTACACAGCAGTTTTAGAACCACACGACCGCATCATGGGCTTAGACCTTCCTCATGGTGGACATTTATCACATGGCTACATGACGGACACAAAACGAGTGTCAGCAACATCGAAGTATTTTGAATCAATGCCTTACCGTTTGAATGAGCAAACTGGATACATCGATTATGAAAAGTGCGAAGAGTTAGCATTGCTTTTCAAGCCGAAGATACTAATCGCAGGCACTAGTGCTTATGccagattgattgattatcaAAGAATGAAAGAGATTGCTGATAAAGCAAATTCATATTTGCTGGCAGATATGGCACATATAAGTGGCTTAGTGGCTGCTGGGgTTATACCAAGCCCTTTTGATTATGCTGACATTGTCTCAACCACAACTCACAAAAGTCTTCGTGCAGTCAGGCATTCCTTGATATTTTTCCGAAAAGGTGTTCGCCGCgttgataaaaaaggaaaagacaTAATGTATGACCTTGAGAATAGAATCAATAGTGCTGTTTTTCCTGGATTACAAGGTGGCCCCCATAACCATTCAATGGCTGGTGTTGGTGTTGGTCTTAAACAGGCGATGCAACCTGAATTCGTAGAATACCAGAGgcaggttttgaaaaatgccagTACTGTAGCCGAAGAGTTGCTCAAAAGAGGATACAACCTAGTGTCAGGTGGTACAGACAATCATTTAGTTCTTGTTGACCTTAGACCTAAGAACATTGATGGCGCCAGAGTGGAGAGAGTCTTGGAACTGGCGTTCATtacattgaataaaaacacGTGCCCTGGTGACAAAAGTGCTGTCAAACCCGGTGGCCTTAGAATTGGAACACCTGCCTTAACTTCCCGTCAATTCAAAGAACAAGATTTTGTGAAAGTGGTCGAATTCATTGACACTGGTGTTGAAATCGCATTGGAAGCGCAAAGTAAAACAGGAAACTCGATGAAATCGTTTAAGGAAGCTGTTTTATCAGATGCTGACATATCAGCAAAGATAAATGCATTAAAGGAGCAAGTAAAAACGTTTGCTTCCAAATTCCCAATGCCTGGATTCGATGAAAAATGATTGGCACTATCGTTATTGgtaacattttcattctttgttAAGGTTTCTTAAGTCTGGAGAAAGTAATTAAGTGTATTGGCATGACAGTAGTTCGTCAGAGTTTTGCTACCTGCTATTCTCTGTAGGTGCCCTGTGTCATTAGGCAAAATTTTAGTAAATTTACTTctttatttaaatattcacatatcgttttattttttgccGTATTTGTTACGAGTTTCCCACCGAAGGTCTAATTTGTCGGTGCaactaatttttcaaacaacatCCTAAAAAGCTTGAATATAAGGTTTCTTTCGTATTTTCGTTGTTCTCCCTAAAactctttttttgttttgttaatttagttaaattttctttcatattctttCCGTTTCTTTCCATTCCCGTCCCTCTTTTTTAATGGCattcaagttttgtttttcattgatttttttctttttctgtttggTTTCCGTTGCATTTCATTGTCACTTCAATCCAGACAACatcttcaatttcaacatGCTAATTTCCAGCTTCCACTTCCTCTCAAATTTTGGTAGCCTGTGTTTCACTTTGGCTACTCAATGAAGGGCTTTAGACCCATTGTATCTATTCTAAGCATATCTCAACGCATGGATGGATCGCAGACAGATACCGTTGACTTTCATACCCTCTTTATTTTATACCATTATGCAGAGTTGTTAATTGTCTCATTACTTGAAGCATATTGCAGACTAACAGCAAATGCGTAATATTTATATCAAATCCAACCATATTAGAGTTTTACGTTGGTGCACTGTTATCGTTTCAATactcttaaaattttttatgcatctAGATAGCATTTTCCACATTGAAGTAGTTTTATTGGAATGAATTCAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CZN7	Serine hydroxymethyltransferase, mitochondrial OS=Mus musculus OX=10090 GN=Shmt2 PE=1 SV=1
P34897	Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens OX=9606 GN=SHMT2 PE=1 SV=3
P14519	Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus OX=9986 GN=SHMT2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001347 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00464 all species →	SHMT	Serine hydroxymethyltransferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001085 all species →	Family	Serine hydroxymethyltransferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR049943 all species →	Family	Serine hydroxymethyltransferase-like	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR039429 all species →	Domain	Serine hydroxymethyltransferase-like domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11680 all species →	SERINE HYDROXYMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004372 all species →	Molecular Function	glycine hydroxymethyltransferase activity	Interproscan
GO:0019264 all species →	Biological Process	glycine biosynthetic process from serine	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0035999 all species →	Biological Process	tetrahydrofolate interconversion	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006565 all species →	Biological Process	L-serine catabolic process	Interproscan
GO:0006730 all species →	Biological Process	one-carbon metabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046653 all species →	Biological Process	tetrahydrofolate metabolic process	Interproscan
GO:0046655 all species →	Biological Process	folic acid metabolic process	Interproscan
GO:0050897 all species →	Molecular Function	cobalt ion binding	Interproscan
GO:0070905 all species →	Molecular Function	serine binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00600	glyA, SHMT; glycine hydroxymethyltransferase	EC:2.1.2.1	Antifolate resistance	ko01523	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.