Gene detail

Detailed information of ENSSJYP00000005446.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_002166188.2, transportin-1 [Hydra vulgaris]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

ENSSJYT00000005628

ATGGATAGTCAACGAAAAACCCTTTTCTCTAGGGTACCCCTACCCCTTCTTCCAATTCGAGGTGGACTACCTAACATGAAGATGGATGGAAGCGGCTGGCAACCTAACCAACAAGGATTAGAACAAATTCTTCAGCTTCTCAAAGAAAGCCAGAGCCCAAATACAGACACGCAAAGAGCTGTTCAACAAAAATTGGAATCACTTAATCAGTATCCAGATTTCAAtagttatttaatttttgtattgacGAAATTAAAGGGTGAAGATGAGCCCACTAGGTCATTAGCTGGTCtgattttgaagaataatGTTAGAGGCAACTATCACAGATTCCCAGCTGAAGTAAGGGAGTTTGTGAAAGCAGAATGTTTAAATGCAATTGGAGACCCCTCGCCCCTTATACGTGCCACAATTGGTATTCTAGTCACAACTATCGCACAGAAGGAGCTTGGAACATGGCCAGAATTGCTACCTCGACTTTTGCACTTGCTTGACAGTGAAGACTTTAATGTTTGTGAGGGTGCGTTTGGTGCATTGCAGAAGATTTGTGAAGATTTGGCACCCCAACTAGAGGCAGACACCGCAAATCGTCCTACAAATGTTATGATACccaaatttttagaattttttagGCACAACAATGCTAAAGTTCGGTCTCATGCTATTGCTTGTGTTAACCAGTTTGTGATTTGCCGAAGTCAAGTTCTAATGCATCAAATCACACAGTTTATGGAGGGACTTTTCAGTCTGTCAAACGATAATGACCCAGAAGTGCAAAAGAATGTTTGCAGGGCAATAGTCATGCTTTTAGAAGTTAGAGTGGATCAGCTGATACCACAAATGAATAGCCTTGTTGAATACATGCTGTTACGAACCCAAGACTCTGAAGAAAGTGTTGCATTAGAGGCCTGTGAGTTCTGGCTTGCATTGGCAGAACAGTCAATCTGCAAACAAGTCCTTGGTCCATATCTGCAAAGGCTGATACCAGTTCTTGTCAATGGCATGAAATACTCAGAAATGGACATTGCTTTGCTCAAGGCAAATGTAGAAGATGATGAGAACGTACCTGATAGTGAACAGGATATTCGACCAAGATTCCACAAATCTAAAACCCATAATCCTGATGGACAACAAGAGGAcagtgatgatgacgatgacttAGACGATGATGCTTTATCTGATTGGAATCTTCGTAAATGCTCCGCAGCAGCATTAGATGTTTTGGCAACTGTTTTCCGGGATGATCTTCTGCCAATTTTGTTACCAATCTTAAAAGAGATATTATTTCATCCGGACTGGATCACGAAAGAATCCGGGATCCTTGTTTTAGGAGCCGTTGCTGAAGgCTGCATCAACGGAATTTCTCCTCATCTGCCAGAATTGGTCAACTTCCTTATTGCATCTTTATCTCACAAAAGAGCACTTGTCCGCTCAATCACAAGCTGGACACTAAGCAGATATGCATCTTGGGTCGTTCAACAACCCCCCGAaacatatttacaaaaattgatgacTGAGcttttgaaaagaattttagaCAAGAATAAAAGGGTACAAGAAGCAGCTTGCAGTGCTTTTGCAACTTTAGAAGAAGAAGCATGCACAGAATTGGTTCCATATCTTGGCTTCATTTTAGAGACTTTGGTCTTTGCTTTTAGTAAATATCAGCACAAGAATCTCCTTATTCTTTATGACGCAATCGGCACTTTGGCAGATTCTGTTGGAGCTCATCTTAATAAACcagaatttatcaatttattgatGCCTCCACTCATTAGTAAATGGAACGAACTGAAAGATGAAGATAAAGATTTGTTCCCATTATTGGAATGTCTTTCATCAGTTGCAACTGCCCTTCGTTCAGGTTTTTTGCCTTATGCAGAACCAGTGTACCAAAGATGTGTTTCCTTGGTGGAGCAAACACTGACACAGAGTTATGCTGCTCAAATGCACCCAGATCAAGTTGACATGCCAGATAAGGATTTCATGGTTGTTGCTTTGGATTTATTAAGTGGATTAGCTGAAGGATTAGAAGCCCATATCGAGCATTTTGTTGCCAAATCAAAGATTGTCACACTTCTCTATCAATGCATGCAGGATCCTGGCCTTGAAGTTCGACAGAGCTCGTTTGCACTTCTCGGTGATTTGACCAAAGCGTGTTTTCAACACGTCAAACCTGCCATTCATGACATGATGCCAATCTTAGGACAGAATCTGAACCCTGAATTCATATCAGTGTGCAACAACGCAGCCTGGGCTATTGGTGAAGTCGCTGTCCAGCTAGGGTCAGAAATGAAAGATTACATCGAAGTTGTTTTGATTCGGttgattgaaataataaaCCGCCCTAAAacgccaaaaacattgttggaAAACACAGCAATCACAATTGGGAGACTGGGTCTAGTTTGCCCTAATGATGTCGCGCCCCGGTTACAACAGTTCATTCGACCCTGGTGCACATCATTGAGAAACATAAGAGATAACGAAGAAAAAGATTCTGCTTTTCGTGGTGTTTGCAGCATGATTGGAGTGAATCCAGGAGGTGTTGTCCAGgatttcattttcttctgtGATGCTGTTGCCTCTTGGGTCAGTCCTGCGCAAGACCTAAAGGAAATGTTTGTCAAGATACTGCATGGATTCAAAAACCAAGTAGGGGATGAAAATTGGAAACGATTTTCAGACGAGTTTCCTGCACCTTTGCGTGAAAGGTTGACTCTTCAATACGGTGTCTAA

Transcript

ENSSJYT00000005628

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BFY9	Transportin-1 OS=Mus musculus OX=10090 GN=Tnpo1 PE=1 SV=2
Q99LG2	Transportin-2 OS=Mus musculus OX=10090 GN=Tnpo2 PE=1 SV=1
O14787	Transportin-2 OS=Homo sapiens OX=9606 GN=TNPO2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004086 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13513 all species →	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR040122 all species →	Family	Importin beta family	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527 all species →	IMPORTIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18752	TNPO1, IPO2, KPNB2; transportin-1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.