Gene detail

Detailed information of ENSSJYP00000005968.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_002160512.2, protein LSM14 homolog [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000006203

GTTGTTTTCATCGTTGAGCGAAATTGGAGAGGGAAGATAGGTATTATGAAAGATTAGAGAAGGAAAATCATCGCTAAAAATCTCCACCATCACGTCACAAACGACAGTAAAAGCGACAAAAATGAGTAGCAGCGGTACACCGTATATTGGAAGTAAAATAAGCTTGATATCCAAGGCAAAGATTAGATATGAAGGCTACCTTTACACGATCGATACGGAGGACTCAACCGTGACATTGGCAAAAGTGAAATCTTTTGGAACAGAGGACAGAAAGGCCCCAAATAAAGTACCAGAGAGAAATGAAATCTATGAGTACATTGTATTTCGTGGAAGTGACATAGATGACCTCAATGTAGCAGCTCCTGCACCAAGTGGCAGCAAACAAGGGCAGGTTGCTGAAGATCCAGCAATTGTGCAGACTGGAAACACACAGCCAAATATGTACCAACAGCAAATGCCAATGCAGTTAGGGACACCATTCCCCCCACAGAGTTATGGACCATTTGGTGGAATGCCATATGGATATCCTATTGGCTTTAGACCACAGGGAAACATGCCACTGTCCTCAGTAATTGGACCTGGGAGTATGGGTGACCGCAATACAAGGTCTTCACCATTTGACAGATACAGACAAAGCCCATCTCCACCACATGCAGGACCAGTTGGATCAAGATACCAATCTAAAGACAAGGAAGAGAGAAGCCAGTCTCCAGATAGTGGCATGGCGAGACAGAGAGACAGCCAGCGTGCATATGACAGCCAGAGTAATGCACAGAAGTCATCAAGAGAACAAAGGGTCAGCCAGCAGTCTCAGAGAGAAAGTGAGTCATCAAAAGAACGCTCTTATAATGACAGGTCATCTACCAGGAAGCACAGTAAAGATAATGGTCAGCCAAAAGAAAGGCAAAGTTATAAGGATCATGATAGCAAAGAACAAGGTAGAAGTAAAGAACAAGGAAGGAGTCAGGAAAGAGGACGGGACTTGGATGCCAAGGGAGGTGATTATTCAAGAGGCAACACAGATtcaaaagacaagaaaaagcaattcaatgaagcatcaaaaagaaaagagattACATCAGACACAACAAAAAGTTCTTCAAAGGAAACAAGTAAAGAATCCAACAAAGAAGAACAACCATCCAGTCGCTCATCaggcaatgaaaatgcaaagacCCATCCACGAGGAAGAGGGAGAGGTCGTGGACGAGGTAGAGGAGCATACAATAAGACCAAATTTGACAAGGAATTTGACTTTGAACGTGCCAATGCAAAATTCAATAAAGAAGAAGTTGAGAAAGAGCTACTGTCttcattaaagaaaaatgtctcattgaaagatgaagatgatGTAGTTGTTGAGGATGGACATGGGGATTCATTGCATGATGAGCCTGAAGCTGATTTCCAAGATGATGACGTTTACTATGACAAGTCAAAATCATTCTTTGATCAAATATCATGCGATTCAATTGGTCAGTCAAATGACATATTTTCAAGGCGTAAAGAGCGTGCCTTAAACGTTGAGACGTTTGGTGTCATGTCTAGGAATTACAGAGGAAGACCGTATCGCGGTCGTGGTGGTCGAGGTAGAGGTAGAGGCAGAGGTTTTGGTCGAGGAGGTCAGCAGTCAAGAAGAGGTGGCCGAGGTGGTAACAGAACATGGGTGGATTACGAATTTGATTTCGAGGCTGCTGGTATACGACAAGGAGGCAAATCAAACAAGTCTGGAGCAAGCTGACCTGTTGATGAGAAAACTTTTGAGTTGGTAgagaattttcaagaaattaaCCAAGGCCTTGGATGAGGTTTTATTAAATTGGATTAAATGCTTTCTTCTTTTGTAAGAAGGTGAGTAGAGGGATGATTGACGTCATCAGTCAGGAAAAACATGGTATGTACATAAAAAATCACCGTTCTCGCAAGAGCAGCTTAACACACCCAGGAATTGGAAACGCCTTAATACTGTCATCGTACGATAATTGCCCTTCTATAATTTCACAACAAGAATTCTTACTCAACGTATTGCACTTTGCCCACCACAATCATCGGTTTCTGAGGCAGTCATGTTGCATATTTGCACCCTCCTTGTGTGATATTTGGCCTTCTAAAGATGTCGTCCATCCTTTATTTTGTGTTGAAAACATTGTTAATAAATTATCTGATCTTCGTGAAATTGTCAATGAGTTCCATCTATGTTCTTCgttcaacaaatttttaatattttattttatgatctTATTGTTTGCTGAAGAACGCTTAGGTATAGGATTTGTTTGAATGATGAACCCCTACTCCATGGTGCTTAGTAAGGTTTAATTTTTTGGAGATGTTTGATAGGCCGTTAAGTAGCATTCATATTCATCTTTGAGCGTATCCCGAAGACATTTCATCGTAATGAACACCAAAATACTGCTGTTCTGGTATATTAACTGAATATAAGTTGTAGCAAATTGAAACAACAGAATAGAAAAAGATCTAACAAAGGTAGCGCCTTTACGCCTTGATCGAGATTCCCATAAAATTAAACGTTGCCCTGTCATGGCAAAGAAGCGTTAAATGTTTGGTTTCAGAATCTAGGATCGGTATGAACGACATCCGTTTCTACAATATTGCGATCGATCTGTCTTTGTGTTTTCAAAACGCAACAAATCAACCCAAGGATCTAGGGTGACTTTTATTACTCAACGCGAGTTTACCTGGCTTTTTAACCGTGACCTCATCCCTTGCCACAAGTATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A8M2	Protein LSM14 homolog A-A OS=Xenopus laevis OX=8355 GN=lsm14a-a PE=1 SV=1
Q8AVJ2	Protein LSM14 homolog A-B OS=Xenopus laevis OX=8355 GN=lsm14a-b PE=2 SV=1
Q6NVR8	Protein LSM14 homolog A OS=Xenopus tropicalis OX=8364 GN=lsm14a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09532 all species →	FDF	FDF domain	Domain	Interproscan
PF12701 all species →	LSM14	Scd6-like Sm domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR047575 all species →	Domain	Sm domain	Interproscan
IPR025609 all species →	Domain	Lsm14-like, N-terminal	Interproscan
IPR025761 all species →	Domain	FFD box	Interproscan
IPR019050 all species →	Domain	FDF domain	Interproscan
IPR025762 all species →	Domain	DFDF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13586 all species →	SCD6 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan
GO:0034063 all species →	Biological Process	stress granule assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000005968.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.