Gene detail

Detailed information of ENSSJYP00000006061.1 in Catostylus mosaicus

Genomic Location: chr8:2011024...2021278
NR annotation: ULM60682.1, axin [Dynamena pumila]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSJYT00000006311

atGGACGCCGATACAGTGGTTTTGCCTACTTCGAGTCGACCTCCGCCGGCAGGGCAGGATGCTGTTGAGTTTAAAGAAGGAGAAATGAAACATTCAGAATACCAAGGAGGTAAAGAAAGTTGCTACGATGGTGGTAAATCAGTCAAAGGAACTCCCCGTAATTGGTCATGTCAAAACCCTGTAGAAAATCCACAGAAATTTATCAATACGCAggaaattttttcatctaGAGATACTTGTAATACAGTTGCTCAAAGATCCAATACTGGATGTTGTtcacagcatttttatgaaaagtgGCGGACCAATTTTGAATCGTTATTGTATGATACGGAAGGGAGACGCGTTTTTTACGAATATCTTTCGCGCGAGGGGTATGGAGTACTTTTGGATTGTTTAGGGGCATGTGAAGTATTTCGAACTCTGCCTCTAACCAACGATTTGTATATCTCTGCTCGagatttttataaaagattTATTCAGTATAGAGACCCAAAACTTCGTTTACGCGATTTAACACGGAACAAAGTGAACCAGTGCATGCGAAGTAGTTCGTACCATAGCTTAATGTTCGAAGAAGTCGAACGCGATGTACTTAACGAGTTAAAATGCCCGTGGTACGATAAATTTATATCATCAGATTTCTATCTTAACTACTGCCTATCAGCGAATCAATCCCCAGATCAAGACTTGAAAGCTTTTCAGCCCAGCTCGAAGGGATTAGGAATGCCAACGGTTGAAGAAGAGAGCACGGGAGATTTTAGAGAAAAAGATGGCGCCCACGGTAAAGAATTTAAAGGGAAATCCATAAAATTCTCAGATGATGCATTCATAACTAAAAAAGAAGTTGTTGCTTTTGACCATCATTTCATTGTCTCCTTTTATTTTTGGTCATCAActaattattttgataattccAGTAAGAGAGGAAGTTGCAACTTGGcaataaattatgataaaattgatcatttttggttGCACACCCTTTCCAAACTAAAGGCTGAAGGAGGttttgccatttttccagGATGTATACACCACTCATTTAAactatttttctctttctcaCAGAGAACTGAAAGGATAAACAGAGACGCAATGAAACCCATGAAACCAGAAGATTTTGCTAGAATATTGtgtgaaaaattagaaaaagttaTTCGAGATAGGGAAAGTGCAGAAAAAGCCATGAGAGAAACAACTGCCCCAGTATCTGTAAGTATCTTTATAAAAGATGTGATGACTCAAATTACAGCAAAATTGCATCTATTTCAGGAGGAATcagttgataatgataaattgGCAGGAGAGAATGTTACAAGGACCGGTGCTACTGCACCTGTACCAACTGGAGACGATCAGTCGGTTGCTAAGGGCTCTTGCCGCTCACATAGCAGTTATCCACAGTCAGACAGATATTCAGTTGCAGGCATGTCCTCTGCAAGTGGCTCTGAGATTAAATCGGACAGTCAGTTAAAATACAGACATGGAGCCAAGGAACTTGCATCTGCCCAAGACCCATATGCCCATCAACAGAACAATAATTGCCCGCCTATAAAATTAACTTCTACTAATTTAGAAGCATTGAAAACTGTGCAGGGTAGTGTTAATCATCAAAGGATTTATTCGTGGATCGAACATAATGAAAGATATAGATCTGAAATGGCACATCCACATGTAGGGGAATCACCACGTGATACTCCTTCAACGAAACGAAGGCATCATCCCCCCGTTGTGTATGATACGACCAGGCCTGGTACTGATTACCATCTTATGCGAGAGCCAGGTGCTTCATTGGAACCTCTGCCTGATACCAATCATGTGTTAGAACAAGCTCGAAGGAGACTGGAGGATAATAGTAGGATGCTGAGCAAGAGTTCAAGGAAGCCAGGAAGGTCCAAAACGGCACTCAGTAGCGCAACTGGTAACTGGACCTTATCAGACTCTGCATCCTCGGTATCACGAAACCAAGTACCTTCGGTCGTATCATCTTCCATCCCGTCATCAGCGTCACAGTATATTAATGAATCCATCAGCGATCTGCACAGTGAGAGCGTTCGCAGTCAAGGAAGTGGTGGCAGCAAAGGACATCACAAAGAGAAGACAGTTGTTACGTATTTCCTCGGGTTAGAACCTATTCCGTACCGCACAAGCTTGCCAGGAAAAAACATCACTTTAGGACAATTTAAGACGTTGATCACCAAGAAAGGAAACTACAGataTTTCTTCAAGACAAAAACCAAAGATGATGGAATCGTTTATCAGCAGATGGAGGAAGATGATGAACTTTTACCcaaatttgaaagcaaaatcGTTGGCAAAGTTAAAAAGGTTGAATAA

Transcript

ENSSJYT00000006311

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P57094	Axin-1 OS=Danio rerio OX=7955 GN=axin1 PE=1 SV=2
O42400	Axin-1 OS=Gallus gallus OX=9031 GN=AXIN1 PE=2 SV=1
O35625	Axin-1 OS=Mus musculus OX=10090 GN=Axin1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006641 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan
PF00778 all species →	DIX	DIX domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR001158 all species →	Domain	DIX domain	Interproscan
IPR043581 all species →	Family	Axin-like	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR038207 all species →	Homologous_superfamily	DIX domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46102 all species →	AXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0030877 all species →	Cellular Component	beta-catenin destruction complex	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0045860 all species →	Biological Process	positive regulation of protein kinase activity	Interproscan
GO:0048468 all species →	Biological Process	cell development	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000006061.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →