Gene detail

Detailed information of ENSSJYP00000006158.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: CAH3162027.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000006423

TGGCGAACAATCAAGATGGGACTAACGCATGGGGAACATTGATTGCAATTAAACGAATCAACGAAGGAGACTTTGAAGAAGGCAATGCAATTAAACTTACCAAGAATGCAGTTACAATAGGCCGACTCCAAGCAAAAATGGAACACTGTTGAATtccaaaaaagtaaaaaatgaaatgGTTGAAATGTATGATGGTTCAGTGATTAGATgcgtttataagaaaaatgaaCCAAATTTTGATGTGACGTACCTATTTAAATCATCGAATATTCGTTTGAACAAAGATCAAGAATGTGATACCTTAGAGATCGAAGCAACACAGGAATATATTAATGACAGCCAAGGAAACCTCGAGAGCATCGATGACAATGTAAGAAAACGCCGCGCCAAGTGGGAATGCGATGACGATCATAAAAGCAAGCTCGTTCGACTTGACAGCACGTGCCGTCCAAAATCGATTGAAGGAGAAAAGAAGATTTCTGAAGCACACGACGAGGAAGTAGAAGAGAACTTAACCTGTGGCATTTGTCAGGATATCTTTCACGAATGCATCAGTGCTCAACCGTGCATGCATTCATTCTGCGCTGCTTGCTATTCACAATGGATGGCCAAATCAAACAATTGCCCCTCTtgTCGTAAGGTTGTCAAACAGGTTGGAAAAAATCACATTGTGAATAATCTTGTAGCTGCgttccttaaaaaacatccagACTGTCAAAGAAGTGAGGAAGAACTAAAAGAGATGGATCAGAatgacaaaattaaaaataaaacgGTCACCATTGATAATCAGGGGAGCtgtcaatattttgaaaatgattctgTAATTGAAGTGGAAAGCAGCGAAGAATATGATGAcagtgatgacgatgatgatgatgacgatgatattAGTGAAATATATCCTGGTGCATTGGTTTCTCCCTCGTCTATTATCCAACCGCCaAATATCATATCCAGAGTTCCTAGTGTTTTTTCCCGTTCGCCAATGGCAAGGTGCAGGCAATGTCCATACTTTTCATCAGAAAGTAGCTCAAGCAGTTCTTGCGGTTCTTGCAGTTCATCAAGTGCTGaTTCATCAGCGTCAAGCGATTTCAAATGCTCTTTAAATCAAGTTCATATCTACTGCAGTTGTTGTCAGCAATGTTTTCCAGATCGACGTAACACTGTCCTGTACTCATCGAGAACAGATGCAGCATCTAATAATGCAAATATAGATGTCCAATgttCCTCTTGCGGAAGGCTGTTTTGTCATCTGTATTGGGGTTGCAGAAAACCTGGGTGCTTAGGGTGTCTAAACAAGTTCAAAGATTTTAACTTTGGGAATGATTGTCTTGCGAGGATACTTAATGACAATGTGTTTGAATCTGATGTCTTCAAGcaTTATTTGACACAGAAAAACATGGATGTAATAGAACTGTTGCGAGTTTGCATTGAGAAGTTTCAAAATAAGGAATTCACTGTTCCAAGTCGGTTACGTTTGTCTGAAAACGATATCGTGTGCTTCAGTTGTGGACTGCGTTATTTCAAAGAACTCGCCTACCAGTTCCGAGGTCAAATTCCGAGAGGGGATTTACCAAATGACGTCACATCACGTGAGGACTGCTATTGGGGTAGGAACTGCAGAACGCAAAGACACAACAACAACCACGCAAgGCACTACAACCATATTTGCGAACAGACTAGATTTGTATAGTTCGACCGCTGCGATAGCGCAGCATTGAAATTAGAGTTTTAGTTCAGTATGTTAGGTAGTTATTACGCTTAAAAACCAAATTTGCTTAGAGTTTACATATTTGTATTCATTGCTGAATGCTGAATGATAGGCCCCTAGCTCTAGTTCTCTTGGACACTTTGAGGGTACCCTTAACCTTGTACCctattttataaacatttcatAACCGCCATCTTGTTTAACCTATTTTTACTGAACTGCTTGACCTGTTTTCACCATGGCCTTTTATATTATTCTTAGTGATGGATTCCCATCGTATTTTCCCTCGTTTATCGTCGGCAGTCCCATCTCCTGTACATATTGAAAGAATTTGGCTGTCAGATTGCATACcgaattgcattgcattgcatttatAGTATCCCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RF77	E3 ubiquitin-protein ligase CHFR OS=Pongo abelii OX=9601 GN=CHFR PE=2 SV=1
Q810L3	E3 ubiquitin-protein ligase CHFR OS=Mus musculus OX=10090 GN=Chfr PE=1 SV=1
Q96EP1	E3 ubiquitin-protein ligase CHFR OS=Homo sapiens OX=9606 GN=CHFR PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004999 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17979 all species →	zf-CRD	Cysteine rich domain with multizinc binding regions	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR052256 all species →	Family	E3 ubiquitin-protein ligase CHFR	Interproscan
IPR040909 all species →	Domain	E3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16079 all species →	UBIQUITIN LIGASE PROTEIN CHFR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007093 all species →	Biological Process	mitotic cell cycle checkpoint signaling	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10644	CHFR; E3 ubiquitin-protein ligase CHFR	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.