Gene detail

Detailed information of ENSSJYP00000006348.1 in Catostylus mosaicus

Genomic Location: chr6:12867310...12877684
NR annotation: XP_033099856.1, betaine--homocysteine S-methyltransferase 1-like [Anneissia japonica]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSJYT00000006626

TCGCAATCTTTCTACTTGGCATCGACTCTAAAGCAAACCAACTGCAATTGATCTTTAGCACAATGAGTAAAAAGAGAGCTTTGCTAGAGCGACTTGACGCAGGTGAAGTTGTCCTAGGCGATGGAGGAATGATATTCAATCTTGAGCTGAGAGGATATGTTTCCGCTGGTGCCTACACCCCTGAGGTCGTAATGGAACACCCAAGCGCAGttcGTGAATTGCATCGTGAGTATGCACGTTCTGGCTGCGATGTTTTGCAACCTTTGACATTTTACTTGAATACAAAAAGCCTTAAGAAGCTTGGCATCACCACAACGagCAAAGAAATCAGTGATGCTGCTGTCAAGATTGCCAAAGAAGTTGCAGCTGAGCACGACAGACATATAATGATAGCTGGAAGCCTTGCAGAAACAACTATTTACCAGGGGCCTGAAAGCAGGAAAAGGGTTGAGGAAGAACTTCAACCTCAGATAGAAACTTTCATGGAAAATGATGttgattttgttattgctGAGTACTTCACATATTGTGATGAAATGTGCTGGGCAATAGAGGCTTTGAAGAAGACAGGCAAACCAATTGTAGCCATGATGAACATTGGTAGCTATTGTGATGGGGGTGGTATTTCGGCTGGAGACTGCGCAGTAAAAATGGCAGAGGCAGGTGCTGATGTGATTGGTTTGAATTGCTGCTTTGATCCTCAACGTCTTATCGAAGCAGTGAAAGTAATGAAAGAAGCCTTGGAAAAAGCTGGCTATAAAAAGCATCTGATATGCCAGCCCGTGGGCTCATGGACCCCTGAAGTGAAACGTGGAGGCTGGGTTAACTTGCCTGAATGGCCACTCGcCCTTGAACCAAGAACGCTGACTCGATTCGAGGCACGGAAATTTGCTAGAGATGCATACGAGGCTGGCATTCTTTATATAGGTGGCTGCTGTAATATCCACAGTTATCACATCAGAGAAATGGCTGATGAGCTAGCACCCGAGCGAGGATTCAAACCCCTCAATTCTAACAAGATGAAATCTTGGGGTGAGAATCTGAAGGATTCCAACCATCTTGTGACGAAGAAGAGggCTGGACGCGAGTACTGGGGAAATCTTGAGCCAGCAACAGGAAGATTATTCTCTCCACCAATAGCAAAGTTGCAATAAGATGCTGAGTATATTGTTATGGAATATTCAACAGATATTCAAttaagaagataaattttgtgttttgtaGCTTGTAGCGTATTAGATTTTTAGTCtatgatttttcttttaattctgGGAAGAAGGAGAACAAACGTATTGGGATTATCAAGGAGCAACTTCTCTACTATTTTTCGGTTGTATGTGTCAAGGGTTGCTCTGAACTTCAGTAGCGATAACCTACTAAAATTGTCTTACCTTTATGAGAAACCAAGTCACATGGCGACGTGGACAAGCATCTAGAATCCTTGTTCATATGTGTGTCCTTGGTCTGTTATTATTCctttttcacagttttgatATGTTATCGCAATGCACCCTGCCACCTAACCTGAGTGGTCATCCTCCGCCATTTTCTTAGTTTCTTGTTGCTTCCAGTATCTGCCAGTCTACCCAGCCCAACCAAATGCATCGGCTTCGATGGATGTTTTCCCTTTACCTTTCTTTTCTATCCATTAGACATTAGACATCGGAGAGAGATCACATGCCCTACAAAATACATTCAGCATTACTGATTTTATAGTTTCAGTTTACTACTGCTTTTGTTTGCAGCTTTTTTTATTGCCCATGTGAGTTTGTTACCAGTAAAGAAAGTATTACGACCGCTAGTTTTCTAAGTGGATGAAGATTTATTATGTATCAGCTAACTCATATGAAGAAGTCTTGCCCAAGGAAAGTTTTTTGTTCGAAGGCAGGTAAACAGATTGTCTTCCCTATGCTTTTgtaagttgaaaattttcatattattgAAATGCTGACGGAGTTGAATTTTTCATGTAGCCTGGAGTAAATATTCATGTTTAGAGGAGTTTAGATATCCGctgttttttcatatttagtgGATGTAGCTGCTGTTTGTTCATACGCAGAGGAGTATATATGCGTTGTTTTGTCATACGTAGAGGAGTATGTATATCCGctgttttttcatatttagtgGATGTAGCTGCTGTTTGTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I597	Betaine--homocysteine S-methyltransferase 1 OS=Bos taurus OX=9913 GN=BHMT PE=2 SV=1
Q5XGM3	Betaine--homocysteine S-methyltransferase 1 OS=Xenopus laevis OX=8355 GN=bhmt PE=2 SV=1
Q5M8Z0	Betaine--homocysteine S-methyltransferase 1 OS=Xenopus tropicalis OX=8364 GN=bhmt PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000629 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02574 all species →	S-methyl_trans	Homocysteine S-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051524 all species →	Family	Betaine-homocysteine S-methyltransferase	Interproscan
IPR003726 all species →	Domain	Homocysteine-binding domain	Interproscan
IPR036589 all species →	Homologous_superfamily	Homocysteine-binding domain superfamily	Interproscan
IPR017226 all species →	Family	Betaine-homocysteine S-methyltransferase, BHMT	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46120 all species →	BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0047150 all species →	Molecular Function	betaine-homocysteine S-methyltransferase activity	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00544	BHMT; betaine-homocysteine S-methyltransferase	EC:2.1.1.5	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.