Genomic Location: chr8:978955...983784
NR annotation: XP_001640391.2, ribosomal L1 domain-containing protein 1 [Nematostella vectensis]
Species Catostylus mosaicus · all data for this species · gene families
| CDS |
| ENSSJYT00000006688 |
| Transcript |
| ENSSJYT00000006688 |
| Protein |
| ENSSJYP00000006405.1 |
| UniProt accession | Description |
|---|---|
| O76021 | Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1 PE=1 SV=3 |
| Q5RCE6 | Ribosomal L1 domain-containing protein 1 OS=Pongo abelii OX=9601 GN=RSL1D1 PE=2 SV=2 |
| A4FV97 | Ribosomal L1 domain-containing protein 1 OS=Bos taurus OX=9913 GN=RSL1D1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005453 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00687 all species → | Ribosomal_L1 | Ribosomal protein L1p/L10e family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023674 all species → | Homologous_superfamily | Ribosomal protein uL1-like | Interproscan |
| IPR016095 all species → | Homologous_superfamily | Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain | Interproscan |
| IPR050257 all species → | Family | Eukaryotic ribosomal RNA-processing and assembly protein | Interproscan |
| IPR028364 all species → | Family | Ribosomal protein uL1/ribosomal biogenesis protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23105 all species → | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000470 all species → | Biological Process | maturation of LSU-rRNA | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
| GO:0030686 all species → | Cellular Component | 90S preribosome | Interproscan |
ENSSJYP00000006405.1.Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
