Gene detail

Detailed information of ENSSJYP00000006420.1 in Catostylus mosaicus

Genomic Location: chr6:1240843...1266982
NR annotation: XP_047144905.1, phosphatidate phosphatase LPIN2 isoform X1 [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSJYT00000006704

atgaattacTTCAAGGGATTAGTATCTAATGTGAAAGGTTTTTATGATGGAATCAACCCAGCAACTCTCACTGGTGCTATCGATGTGATTGTTGTAAAGCAAGAAGATGGAACGTACATAGGCAGCCCATTTCATGTTCGCTTTGGCAAGCTGGGTGTCCTACGAGCGAGAGAGAAAGtgGTTGACATTTCAATCAATGGTAAAGATGTTGACCTTCACATGAAATTGGGAGATGCAGGGGAAGCTTTCTTTGTTGAAGAATGCCTTGAAGAGAATTTCCCAAATGAGTTGGCTACATCTCCAATTCCATCATTTCAAAGTTTCATGGATGATGGCATCAAACAACTCCACCAAGCATCTTCTGAAGAGGTTAATATTGCTGTGAATAAGCAAGAACTTAGTCCAGAAATGTCTCAATCAAGCAATGATGCTGAAGGCCAGTTATCCATAAGAAGTGATTCACACACCCCAGTAGGTTTGTTAATGACTGTTAGTTCAGATGAGTCAGTCCGTCGCAAAACAAGTTCAACGGGAACTATAGAAAGCTCTCCGTCCACACCTAAAAAAGATTCTGCAGGGAAACAAAGAGAATTATCAGAGAGCCCCTCAAGAGCAGGACAAAGTGTTGTCACGGCATCAGAAAGCATCCCAATACCACTTGGCAATAGCAACAGAATGCGGCTGATGTCTGATAGCGATGACCAGTTGTCTATAATTGGTTCACCTGAAAGTGTAGACTACTTGTCAAGAGATGAATACCCATTCTCAGATATGGACATGCCAATCAGTACATCAATCAGCACCACAAATAATTTGAAAGAATGTGGAGATCCAAGAATGGTGCTTAGTGACACAGAAGCGGAATTAGGAGCACTACAACACAAGGAAAGAGTTCATGATGTGACCTGGGAGTGGGGAGAATTGCCACAGggTCCATTAAAACCAGACAGAAGCGCACAACAGGAATCCGgAAGGAAAAAACGTTCGGAGAAAGCTTCGAAGAACAAGGCCAAGTGTCATTCAGAAGGTCTTTACCTTGACGATGTGTTACGGGCTGATGATGAAGTTGCTGCTTTATATTTAAATAGACAATCTTCGCATATAGAAATTGACATTGATTCTGGAATTGGACAGGATTCGAAGCCGGTATCGCCTATCGATGTCTTTGGCAGAGTTGAAACAGATGAGAGCCAATTGTCAGATGACAGCGGATTTCCTGCGCGAATATCATTATCTTTGTGTGGTGATCTTAAACGTGGAAAAGTCGATACTGagaaatttaaagactccttagtttcatttgacgaatTCTGCAAAACACCTAGCATTTTAAACGATCCAAAACTAGTCATTaaaatggacaaaaaATATTACAATTGGCAAGTTGCAGCACCTTATATAATGGCCTTAGTTGCATATAACAAACCACTTTGTAGGgAAACATTTAAATCCTTAAAACAGCAATATATGCCTCGGAAGAGAAAAGGTTGGTTTTCTTGGCGAACGACAAATGATGAACAAGATTCGTCAGACGAAGATGAGACTGGCACTAAAAAATCGGAAAGACCTCACCACCGAGCCAGATCATTGAAGGTAGATTCAAGCCAAGATTCAGAAGCGAGCAGTTACTCTGAAatgagaaacaagcagaaagaacGTTACAAAAAAGTGACAAGATTATCCTCAAGCCAATGGATTTCTTTAGGCCTGCAAGAAGGTGAAAATAGCATAACATTTTCAGTGACAACGCAGTATCAGggCACTGCTTTGTGTACGGCAAGAATATTCCTATGGGACCATAATGACAGCATCGTCATTTCTGACATAGACGGAACAATCACAAGGTCAGATGTTTTTGGACAAATTCTACCTTACGTTGGAAAGGATTGGTCGCAAGAAGGCgttacaaaattattttcaaacatcGAAAGAAATGGTTAcaagtttgtttatttgtcagCAAGAGCAATAGGCCAGGCTGAGCTGACTCGAAACTTCCTCAGAAGCATTCGCCAAGGTGAAGAGAAACTGCCCGATGGTCCAGTACTGCTATCACCAACTTCACTTGTCAAAGCTTTTCAAAAggaagttattgaaaagaaacctgaagaattcaaaattgcctgtttaaaagatataaaacGAATATTTCCATCGACAAGAAATCCATTTTATTCTGGATTTGGCAATCGAGTAAATgacGTTTGGGCCTACAGAGCTTTAGGAATTccaatttcaagaattttcacAATTAACTATAAGGGAGAGATTAAACATGAATTGACGAGCGCATTTTCATCCTCGTACGCAAAACTTGGCAATCTTGTTGATCAAATATTTCCTCCCACAATGCACTACGACGCCTTTGATGAGATGTGCCCGGATTATTCAACGTTCAATTATTGGAAAACTCCCTTTCCTGATATTGTTGATAGCATCTCGTTAtcagatgatgaaaatatcggCTTGTGA

Transcript

ENSSJYT00000006704

TGATATCGGATGATGACGGATGGATGAGAGAGGTGAAAACAGAAGGGAATTTGATATGAGGAGAATTGACGTACCGGAAACAGTTCTGGGTGAAAAACTATTGCAATTATCACTTTAGTTTCACAAAGTTTTGGTTCAACGCAAGGAAATATCGCTGGTCGAAGAAAAATGGCCTTTTACAAAGCAATCACACAACACTAAGCGTGTTATTAAACCCACTTATCATCATTGTATAACGACCGAAATCGAAAAGAAAggtaaaagaatgaattacTTCAAGGGATTAGTATCTAATGTGAAAGGTTTTTATGATGGAATCAACCCAGCAACTCTCACTGGTGCTATCGATGTGATTGTTGTAAAGCAAGAAGATGGAACGTACATAGGCAGCCCATTTCATGTTCGCTTTGGCAAGCTGGGTGTCCTACGAGCGAGAGAGAAAGtgGTTGACATTTCAATCAATGGTAAAGATGTTGACCTTCACATGAAATTGGGAGATGCAGGGGAAGCTTTCTTTGTTGAAGAATGCCTTGAAGAGAATTTCCCAAATGAGTTGGCTACATCTCCAATTCCATCATTTCAAAGTTTCATGGATGATGGCATCAAACAACTCCACCAAGCATCTTCTGAAGAGGTTAATATTGCTGTGAATAAGCAAGAACTTAGTCCAGAAATGTCTCAATCAAGCAATGATGCTGAAGGCCAGTTATCCATAAGAAGTGATTCACACACCCCAGTAGGTTTGTTAATGACTGTTAGTTCAGATGAGTCAGTCCGTCGCAAAACAAGTTCAACGGGAACTATAGAAAGCTCTCCGTCCACACCTAAAAAAGATTCTGCAGGGAAACAAAGAGAATTATCAGAGAGCCCCTCAAGAGCAGGACAAAGTGTTGTCACGGCATCAGAAAGCATCCCAATACCACTTGGCAATAGCAACAGAATGCGGCTGATGTCTGATAGCGATGACCAGTTGTCTATAATTGGTTCACCTGAAAGTGTAGACTACTTGTCAAGAGATGAATACCCATTCTCAGATATGGACATGCCAATCAGTACATCAATCAGCACCACAAATAATTTGAAAGAATGTGGAGATCCAAGAATGGTGCTTAGTGACACAGAAGCGGAATTAGGAGCACTACAACACAAGGAAAGAGTTCATGATGTGACCTGGGAGTGGGGAGAATTGCCACAGggTCCATTAAAACCAGACAGAAGCGCACAACAGGAATCCGgAAGGAAAAAACGTTCGGAGAAAGCTTCGAAGAACAAGGCCAAGTGTCATTCAGAAGGTCTTTACCTTGACGATGTGTTACGGGCTGATGATGAAGTTGCTGCTTTATATTTAAATAGACAATCTTCGCATATAGAAATTGACATTGATTCTGGAATTGGACAGGATTCGAAGCCGGTATCGCCTATCGATGTCTTTGGCAGAGTTGAAACAGATGAGAGCCAATTGTCAGATGACAGCGGATTTCCTGCGCGAATATCATTATCTTTGTGTGGTGATCTTAAACGTGGAAAAGTCGATACTGagaaatttaaagactccttagtttcatttgacgaatTCTGCAAAACACCTAGCATTTTAAACGATCCAAAACTAGTCATTaaaatggacaaaaaATATTACAATTGGCAAGTTGCAGCACCTTATATAATGGCCTTAGTTGCATATAACAAACCACTTTGTAGGgAAACATTTAAATCCTTAAAACAGCAATATATGCCTCGGAAGAGAAAAGGTTGGTTTTCTTGGCGAACGACAAATGATGAACAAGATTCGTCAGACGAAGATGAGACTGGCACTAAAAAATCGGAAAGACCTCACCACCGAGCCAGATCATTGAAGGTAGATTCAAGCCAAGATTCAGAAGCGAGCAGTTACTCTGAAatgagaaacaagcagaaagaacGTTACAAAAAAGTGACAAGATTATCCTCAAGCCAATGGATTTCTTTAGGCCTGCAAGAAGGTGAAAATAGCATAACATTTTCAGTGACAACGCAGTATCAGggCACTGCTTTGTGTACGGCAAGAATATTCCTATGGGACCATAATGACAGCATCGTCATTTCTGACATAGACGGAACAATCACAAGGTCAGATGTTTTTGGACAAATTCTACCTTACGTTGGAAAGGATTGGTCGCAAGAAGGCgttacaaaattattttcaaacatcGAAAGAAATGGTTAcaagtttgtttatttgtcagCAAGAGCAATAGGCCAGGCTGAGCTGACTCGAAACTTCCTCAGAAGCATTCGCCAAGGTGAAGAGAAACTGCCCGATGGTCCAGTACTGCTATCACCAACTTCACTTGTCAAAGCTTTTCAAAAggaagttattgaaaagaaacctgaagaattcaaaattgcctgtttaaaagatataaaacGAATATTTCCATCGACAAGAAATCCATTTTATTCTGGATTTGGCAATCGAGTAAATgacGTTTGGGCCTACAGAGCTTTAGGAATTccaatttcaagaattttcacAATTAACTATAAGGGAGAGATTAAACATGAATTGACGAGCGCATTTTCATCCTCGTACGCAAAACTTGGCAATCTTGTTGATCAAATATTTCCTCCCACAATGCACTACGACGCCTTTGATGAGATGTGCCCGGATTATTCAACGTTCAATTATTGGAAAACTCCCTTTCCTGATATTGTTGATAGCATCTCGTTAtcagatgatgaaaatatcggCTTGTGATCAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BQK8	Phosphatidate phosphatase LPIN3 OS=Homo sapiens OX=9606 GN=LPIN3 PE=1 SV=3
Q99PI4	Phosphatidate phosphatase LPIN3 OS=Mus musculus OX=10090 GN=Lpin3 PE=1 SV=1
Q99PI5	Phosphatidate phosphatase LPIN2 OS=Mus musculus OX=10090 GN=Lpin2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004385 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08235 all species →	LNS2	LNS2 (Lipin/Ned1/Smp2)	Domain	Interproscan
PF16876 all species →	Lipin_mid	Lipin/Ned1/Smp2 multi-domain protein middle domain	Family	Interproscan
PF04571 all species →	Lipin_N	lipin, N-terminal conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031315 all species →	Domain	LNS2/PITP	Interproscan
IPR013209 all species →	Domain	Lipin/Ned1/Smp2 (LNS2)	Interproscan
IPR026058 all species →	Family	LIPIN family	Interproscan
IPR031703 all species →	Domain	Lipin, middle domain	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR007651 all species →	Domain	Lipin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12181 all species →	LIPIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008195 all species →	Molecular Function	phosphatidate phosphatase activity	Interproscan
GO:0009062 all species →	Biological Process	fatty acid catabolic process	Interproscan
GO:0019432 all species →	Biological Process	triglyceride biosynthetic process	Interproscan
GO:0032869 all species →	Biological Process	cellular response to insulin stimulus	Interproscan
GO:0044255 all species →	Biological Process	obsolete cellular lipid metabolic process	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15728	LPIN; phosphatidate phosphatase LPIN	EC:3.1.3.4	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →