Gene detail

Detailed information of ENSSJYP00000006448.1 in Catostylus mosaicus

Genomic Location: :...
NR annotation: XP_002164359.1, nuclear pore complex protein Nup93 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSSJYT00000006737

ATGGATTCGTTTTTTGGGGACCTCTTGCAAAATGCAGAGCAGCTCACGGCTGACATGGATACTGGGAGTGATCTTCCCCGTATCGAAAGAAACCCATTACAATTAGCAGAAGCTAGTCAACGACTCTGGTCGAAAACAGCTACATCATTATCGGAAGGTGCAGACGTCAAAGCctCATTGCTTCTAAGTTCCAAAGGAGTAGAGCTACCAAAATTGTCCCAAAAGCTAGAGGCACTGAATACCACAAAGAGTTTTGATCCCATTGAGCCTGTTGGGGACACAGATATCCAGgggtttttgaaaaatgaaagagagAATGCAATTCTCTCAGTTATTGAGAACTGTAAAAAGCATACATTTGCTGATGCTGACAAAAACTATTGGCAAAGCATAATGGATGACTGGGAacatgaaaagcaaaaaatattaaactCACTTCTGAGTGGTGGAAAAGAATCATTGGTATTTCCTGTTGAAGCAGAGGTGATGGATATTGGTCTTAGTCAAGGCAGGAGCATCATGTCGATGATGGAAATGACATATGCAAGGCAGGtttatatttgcaatgagtcatTGATCCAAGGAAGAGACTGTAGTTACTTGGAGGCATTTCaacaaattgtaaacaaagccAATGATAAGAATGTTGAAGATACGTGGCATCTCCTAGCTTATATGATAACAGATCTGCCATCTGTTTCAAAGAATCCCTTTGTTAAGAGACAATCCAAAGAAGTACAGAGaactttggtgaaaaatgcaaaagcgTTTTTAGAAGAAAGGTATTTACAGTACATTGAGAAAACTGTTTATGACAACACACAACAAGCTAAACTTGGCGGAATTCCTGGGACGCTCAATCTTGTAAAAAGTTtcctgaaaattaaattacacCCAGCCACTCCTGGATTAGAGGACTGTAGAGTAGATGGCGTTCCTGTTTGGGCATTGATATACTACTGTTTACGTTGCGGCGACTCTACGGCCACCCTTCATGCTGCCGAAGCGTTGCCGCCACAGTACTCCGAGTTCAAAGAAATGTTAAAAGAGTATTTCACAAATGACCTTTGCAGATTGTCACCAAATGCAGAGGCTAAAATACGCCTCCAGTACAGATCGGTTCGTTCATGTACAGATGATTTCAAAAGGATTGTGTTCTGTGTCATTGGTTGTTGTGATACGACTGATAACCATTCTGAAGTTGCTTCAAAAAGTGACGATTATATTTGGTTAAAGCTTCAGCAAATTGGTTTTGATGAGCACGAAATCAATGTTCAAGAGAGAATATGTCTAGCCAAGTTCCAAACTCTGCTGTTGGAAGAATTTGGGCCATCACATTTCAAAGCCTATCAACAGCCCTTTTTGTATTGCCAAATTCTTTTCCTGACGGCGCAGTTTGAAGCCGGAATAGAATTCCTGTCAAGCATAGAAAGACTTCGCTGTCATGCTATCCATTTTGGTTTGGTTTTACGCGAGGCAAATTTGTTGTTAACACCAGATGCCATAAATGCACAGCTAATATCTACAAAGCCATCGGATCCAAAACCAATGCGAAGACTGAATTTTGCCAGGTTGATTATGACGtacattgcaaaatttcaaacaacgGATCCACGCGAGGCACTTGAATACTTCTATTTGCTAAGAAAAATGACTGGACCGAATAATGAGAATCTCTTTGCAAGTTGTGTAAGTGAGTTAGTTTTGGAAACCAGGGAGTTCGAAATGCTCCTGGGGAAACTGAATGAAGATGGTTCTCGGAAGCCAGGCTGTGTGGAAAAATTCAAACTTAATACGTCAGGTATTATTTCACAAGTAGCAAAGGATGCAGAATCGAAAGGCCGATTCGAAGATGCGGCTAGTTTGTATGACCTTGCTGAAaatCACGAAAAAGTCTTGGAAATTCTGAATCGACGTTTAAGTCAGgTTGTCGCTTTGACAAGTGGTCCACATTCAACAAGGGAACGCCTGCAAACAATCGGAATATCTATTGCTGAAAGATATAAAGCTCGTGGTTGCAAAGcctcaaaaacaaaaagtggGACGTTTTATTTACTGCTTGATCTGATGTACTTCTTTGATTTATACCATTCACAAAATTATGACCTTGCTCTTAATACAATTAAAAAGATCAAACTTCTACCATTTACCATGGATAATGTTGAACAGAAGGTGACGGCATTTAAGCAACGTTCAGATGAAATAAAACAGTGTATCCCAGATTTGTTACTGGCGGCCATGAATATTCTTTATAGCAAATATCGACAAGTGAAGTCTGATGAGGACATTGTGAACAGATCATTCCAAAGGAgagttgaaattgaaaagcaaaCTTATCTTAACAGTCTAAGAAGCGAAGCAAGGTCAATCGTTACGTTTGCTGGCTTGTTGCCATACCGTTTGCCTGGTGATAGCAATGCACGTTTGGTACAAATCGAAGTATTAATGAACTAA

Transcript

ENSSJYT00000006737

ACGCTAAATGTTTGCGTGACTGGTATCCTGAAGGCTGTTTCAGCTTTTTCGACTTTCAAGAAGGATTTGTTAAGGATTTGTGAAGTAGGGATTTGGAAGAGCACTTGAAGAAGAACCTTAGGCCAAAATGGATTCGTTTTTTGGGGACCTCTTGCAAAATGCAGAGCAGCTCACGGCTGACATGGATACTGGGAGTGATCTTCCCCGTATCGAAAGAAACCCATTACAATTAGCAGAAGCTAGTCAACGACTCTGGTCGAAAACAGCTACATCATTATCGGAAGGTGCAGACGTCAAAGCctCATTGCTTCTAAGTTCCAAAGGAGTAGAGCTACCAAAATTGTCCCAAAAGCTAGAGGCACTGAATACCACAAAGAGTTTTGATCCCATTGAGCCTGTTGGGGACACAGATATCCAGgggtttttgaaaaatgaaagagagAATGCAATTCTCTCAGTTATTGAGAACTGTAAAAAGCATACATTTGCTGATGCTGACAAAAACTATTGGCAAAGCATAATGGATGACTGGGAacatgaaaagcaaaaaatattaaactCACTTCTGAGTGGTGGAAAAGAATCATTGGTATTTCCTGTTGAAGCAGAGGTGATGGATATTGGTCTTAGTCAAGGCAGGAGCATCATGTCGATGATGGAAATGACATATGCAAGGCAGGtttatatttgcaatgagtcatTGATCCAAGGAAGAGACTGTAGTTACTTGGAGGCATTTCaacaaattgtaaacaaagccAATGATAAGAATGTTGAAGATACGTGGCATCTCCTAGCTTATATGATAACAGATCTGCCATCTGTTTCAAAGAATCCCTTTGTTAAGAGACAATCCAAAGAAGTACAGAGaactttggtgaaaaatgcaaaagcgTTTTTAGAAGAAAGGTATTTACAGTACATTGAGAAAACTGTTTATGACAACACACAACAAGCTAAACTTGGCGGAATTCCTGGGACGCTCAATCTTGTAAAAAGTTtcctgaaaattaaattacacCCAGCCACTCCTGGATTAGAGGACTGTAGAGTAGATGGCGTTCCTGTTTGGGCATTGATATACTACTGTTTACGTTGCGGCGACTCTACGGCCACCCTTCATGCTGCCGAAGCGTTGCCGCCACAGTACTCCGAGTTCAAAGAAATGTTAAAAGAGTATTTCACAAATGACCTTTGCAGATTGTCACCAAATGCAGAGGCTAAAATACGCCTCCAGTACAGATCGGTTCGTTCATGTACAGATGATTTCAAAAGGATTGTGTTCTGTGTCATTGGTTGTTGTGATACGACTGATAACCATTCTGAAGTTGCTTCAAAAAGTGACGATTATATTTGGTTAAAGCTTCAGCAAATTGGTTTTGATGAGCACGAAATCAATGTTCAAGAGAGAATATGTCTAGCCAAGTTCCAAACTCTGCTGTTGGAAGAATTTGGGCCATCACATTTCAAAGCCTATCAACAGCCCTTTTTGTATTGCCAAATTCTTTTCCTGACGGCGCAGTTTGAAGCCGGAATAGAATTCCTGTCAAGCATAGAAAGACTTCGCTGTCATGCTATCCATTTTGGTTTGGTTTTACGCGAGGCAAATTTGTTGTTAACACCAGATGCCATAAATGCACAGCTAATATCTACAAAGCCATCGGATCCAAAACCAATGCGAAGACTGAATTTTGCCAGGTTGATTATGACGtacattgcaaaatttcaaacaacgGATCCACGCGAGGCACTTGAATACTTCTATTTGCTAAGAAAAATGACTGGACCGAATAATGAGAATCTCTTTGCAAGTTGTGTAAGTGAGTTAGTTTTGGAAACCAGGGAGTTCGAAATGCTCCTGGGGAAACTGAATGAAGATGGTTCTCGGAAGCCAGGCTGTGTGGAAAAATTCAAACTTAATACGTCAGGTATTATTTCACAAGTAGCAAAGGATGCAGAATCGAAAGGCCGATTCGAAGATGCGGCTAGTTTGTATGACCTTGCTGAAaatCACGAAAAAGTCTTGGAAATTCTGAATCGACGTTTAAGTCAGgTTGTCGCTTTGACAAGTGGTCCACATTCAACAAGGGAACGCCTGCAAACAATCGGAATATCTATTGCTGAAAGATATAAAGCTCGTGGTTGCAAAGcctcaaaaacaaaaagtggGACGTTTTATTTACTGCTTGATCTGATGTACTTCTTTGATTTATACCATTCACAAAATTATGACCTTGCTCTTAATACAATTAAAAAGATCAAACTTCTACCATTTACCATGGATAATGTTGAACAGAAGGTGACGGCATTTAAGCAACGTTCAGATGAAATAAAACAGTGTATCCCAGATTTGTTACTGGCGGCCATGAATATTCTTTATAGCAAATATCGACAAGTGAAGTCTGATGAGGACATTGTGAACAGATCATTCCAAAGGAgagttgaaattgaaaagcaaaCTTATCTTAACAGTCTAAGAAGCGAAGCAAGGTCAATCGTTACGTTTGCTGGCTTGTTGCCATACCGTTTGCCTGGTGATAGCAATGCACGTTTGGTACAAATCGAAGTATTAATGAACTAAATCAATCTGCCCCAAACAATTGCTTGATGAGGCGGAAAACATGCGCCTCTACCTTAGTGGAGGACTGTCCGAAAACCGCAAAGACAAGAACAAAAAGACCATTTGTGTATTAATGTAGAACGGTTTTGCTAAATATTTTGTACAAATATATTGCAGTTGAGATTGACTATAGGTTTTGTTGTGCTTCAGATGTCGCTAGTTTTATTAGACTATCTGACTGTAATTCTTACTCGTTTAACCCTCATGACATTCCTCTGCCCTTACAACGCGTCTCTTATTTAGATATGATATACTAAAATAGCCTTAAAGACATTGTTACAGTAGCATCCACTCCAGACCACTGTCTcactaaatatttttcaaatagtcGTTTCCATTTGTAAATCCAATTGGGTCACTTCAGAAATAcgttatttatatatttggcattttatcaaaactttgGTATTGTAGTTTGAAGCCAATTTGGACCATTTTATTAACTGTCAGTGAACTAAAGACTTATATTTAACCTTGTcccaaaattcgatatttacCAATGCATTGATAAAGGCCTTTTTGAATTAGCATTTACAAACCTCATCTTCTTTGATGCGAAACGCTATCtacagtttttttttcaaaatacataTTCGTAAATTC

Protein

Uniprot

Uniprot term	Description
Q6NX12	Nuclear pore complex protein Nup93 OS=Xenopus tropicalis OX=8364 GN=nup93 PE=2 SV=1
Q8N1F7	Nuclear pore complex protein Nup93 OS=Homo sapiens OX=9606 GN=NUP93 PE=1 SV=2
Q7ZX96	Nuclear pore complex protein Nup93 OS=Xenopus laevis OX=8355 GN=nup93 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04097	Nic96	Nup93/Nic96	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007231	Family	Nucleoporin interacting component Nup93/Nic96	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11225	NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14309	NUP93, NIC96; nuclear pore complex protein Nup93	-	Messenger RNA biogenesis	ko03019	deepkoala