Gene detail

Detailed information of ENSSJYP00000006766.1 in Catostylus mosaicus

Genomic Location: :...
NR annotation: XP_033123359.1, lysine-specific histone demethylase 1B-like [Anneissia japonica]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSSJYT00000007078

ATGGCGGTTATGGGTTGCCGGTGGGGAGTTTCTTCTCCATCTCTCACGATTTTTGGTGTCTTCTTTTGTTGCTCCTACTTCTCTCGTATCTTCTTGGTAGCAGTCATGCGTTCTACGCTTTGGTCGGCCTTGTCTTCTTCTTCCTACGGCCACTCTTTCTACCCTTCTACCTACATACTTTTCACCTCTTTGTCGAACACGCCCATACTATCACAGCCGTCCTTCTCTTATCTTATCTTGGAGTCTTGTTATTTTCAGTGTTTCTCTGATATGCCTGCGACTTTAGCCACTTCCAACATTTTTGAACGGCAACCCTGCTTCAGACTGGAGCTCCAGATAATCTTTGCAGCTTTTAATGAGGGGGAGAGAAACTTTTTGGATCTATATTTTCCATTTGCCTTTGCCCCCCGCTCTGGAATGACTGTCCCTGTGGGAATTGAGGGGTGCACCTCTAATGCGCATTGTCCGTCAGTTAAAGACAAAACGAGGCCGATTCGAACAATGAGGCTACTGAAAAAGGGCGCGTTGTTCGAAATTGATCAAATCAAGTCTTACTTCCTTCTGCACATGGTTCAGAGAACTCCACTTCATAAAAGGAGATACAGATCATGTGAGAAGGCTGGATGCCCATGTAAAAGACCGTCTTGTTTTGCAAAGGCTGCTCCCGGATGTGTCAAAGATGGGTATACATCAAGATGGTATCATTTATCAAATGGTgaacatttttgcaatgaatgttTTGAATACTTTTATAGGAgCCACTCTCTTGcattactttactttactttttatttccaGGCAGTTGGATCTGCACAATCATTGGCATGGCTCAGCACGTTAACTTATTTACCACTTTTGAAATTCTCATCGCCATTTCCTGTTTTGAAGGAATATTATCCTGATGGCATTGGTTTCAGTGCTTTGTCTACGAATAATGAAAAGCAAACTGATGCTACCGAAATCGATAATTTCATTCAACCTTTTTACAACCCAAATGATACTGAAAAAGCTGGTTGTTACAGTCCAGACATAATGCTACCGGATGAGAAAGAGGCATTTCCAGAACTTGTAAAgCACCCGTCAATTTTCCTTGGACTTCGCAACTTAGTGATCTCATTATGGAATTCGAACTATAAAGAACATCTTTCTCTGGAGAAATGTGTTCCTCACCTTGTTGTCCGAGGATTGGTTCGAATTACAATGTGCGAAATACTCAAAGAAGTTCTAGATTTCTTGACAATGAGAGGAAGAGTCAATTTTGGTATCATGTCGAATATTCCTAGAGAGGCGTTTCTAAATAAGCAATATTTCAAGGGCTCTGTAATTGTAATTGGTGCTGGAGTCGCTGGCTTAGCTGCAGCATTACAGCTGGAAAGAGCAGGATGCCAAGTGAAAGTGTTAGAAGCAAGAAGCAACATTGGCGGAAGGGTTAAGGATGACAATTCACTGGGTATATGTGTCAGTGAAGGACCTCAGATTATAACAGGATGCATTAACAATCCGATTTACATCATGTGCAAACAGGTAACAGAGTTATGCATTGAAGAGGTCGATCAAAAAATCGAGTTTTATTTCAACTTGATGTTGGAGTCAATTGAGGAGCTAAAAGATAATGAGAAAGCTTCCGAAAaaaaactgtcgttgaaaGaagaaaatttattgcagTTTCACCTGGCAAATTTAGAATATGCCTGCGGAGCCTCGCTTGAGCTTGTATCAGCGCTCAATTGGAACCAGAACGAGTCTATGCTTCAGTTTGGCGGAGAACATGCTTGGGTTGAAAGTGGATTTACTCCTGTGATTGACGCATGCTCCAAAGGCCTAGATATAAGGCTCAATTGTGAGGTTACCGATATCGATTATTCTGGAGATCACGTGAAGGTTGTAATTCGTGATGGCGAAGTACTCAGTGCTGATAAGGTAATTGTCACAGTGCCGCTTTCCATCCTAAAGAAAGAGTCAATTAAATTTGTACCGGCTTTGTCCGATGTCAGGAAAGCCTCGATATCAAACCTTGGTGCTGGTAACATTGAAAAGGTAAAGAGAACATCAAATAATGTTCTTATGGCTTTAATTGCCGGTGAAGCTGTGAACGAAATAAAAAGTTTGGACGACGCTGAAATCGTAGAGTGCTGTTTGCAGAAGTTGAGAATAATGTTCCCAGACCAAGTAATTGAAATGCCTGGTAAATACTTTGTAAGTCATTGGAGTAGAGAAGAGCATATTGAAATGACGTATTCATATGTGGGCATCAATGGATCTGGTGCTGATTATGATAATCTTGCTGAATCAATCGATGCTAAAGTCTACTTCGCTGGAGAGGTAAATGTTTTGTCGTTTAATGTTCCCTCCCTTTTCCCTTCTGCTTATATGTCTATGAACCTTATCTTACTCTTTCTTTGCAAGAACCAATTAGATAGTATAATCGATGAAGATAGTATAATAATGACCCGATTGAAATGTCTCCTTTTCCGTCGTCCTTCTATCAAATATAGACTATGCAAAAAAGGAGACAACATTGTATGTTTATTAAACAGGTATTATTCTTGA

Transcript

ENSSJYT00000007078

Protein

Uniprot

Uniprot term	Description
Q8NB78	Lysine-specific histone demethylase 2 OS=Homo sapiens OX=9606 GN=KDM1B PE=1 SV=3
Q8CIG3	Lysine-specific histone demethylase 1B OS=Mus musculus OX=10090 GN=Kdm1b PE=1 SV=1
Q21988	Lysine-specific histone demethylase 1B homolog OS=Caenorhabditis elegans OX=6239 GN=amx-1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01593	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF04433	SWIRM	SWIRM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007526	Domain	SWIRM domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR002937	Domain	Amine oxidase	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050281	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan