Gene detail

Detailed information of ENSSJYP00000007362.1 in Catostylus mosaicus

Genomic Location: chr2:931876...938075
NR annotation: XP_002155439.3, interferon regulatory factor 5 isoform X2 [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSJYT00000007700

aagcACACATTCTCAATTCCAAATGGCAACACCAGGAATGGGGGCAGCAGGTCCCCATGGCAACCGACAAAGGCTGCGTCCATGGCTCATTGACCAGATTAATAGTGGCACATACCCCGGGGTTAGCTGGATAGATAAAGAGAACATGGCGTTCAAAATACCTTGGAAGCATTTTGGCAAACCGGGGGTGAACGAAGAGAGGGATGCAAAGATTTTCCGGGAATGGGCAAAACATACAGGGAAGTACAAAGAGGGTGATCCGTCGGATGCCTCAACTTGGAAGACCCGTTTCAGATGTGCTTTGTACAAGTTGCAAGACATAGAAGAGCTCAGTAAACTGAACATGTTGGATGGCGATGAGCCGTATCGCGTCTATAGATTTCGATCAAGAGAAGAGATGGAAAATGATACCAGGTTCTATGCTGCGGGGACGATCATGCCAAGTCCTGCACCCTCTTCAGAGGATAGTTTTGTTGTTGATCACAAAGATGAACCCGTCATGATAATGGAAGATGAGTATATTGCATCAGAATTAGttaAAGATTTGAAAGTCGATAATATAGATTCCTTTATCACTGAAGTATCAAATTCGCCTTTGTCATGCAATGGCTTCAATGTATCAAAAACTGGCATCCCAGTGCAGCCGGTACGGCCAACGATTTCCTCATCTGTTGATCTACAGATAAAGCTATTTAACAAATCTAAAGAAGTCACAGAACCATTCATAATGAGCAATCCTACTGGTTGTCGAATCGCCTACAAGGCGCCTCCGCCGCTACCAACAGATCTTGCCAATCGCGACAACGAAGAAGTTGTTAGTCACATTTACGGACCGTTCCAAGCGCAGCAAGTCTACTTCCCTGAGACAGATGACTTGGAAACGGCGAGACTGCTCGAGTTTATGAAACGTGGACTGGTCTTGCAGACCCACGATAATGACATCTTCGCCACAAGGCTGTGCCAGGCAAAAATTTTCTACGCAACATCGCAAGCAGACGACGCGCAACCGACGCAGCTGCTACGTGAAAACACAACAAAAGTCTTTGACTCGAAGAAGTTCCTCCAACAGCTCGAAGCGGCCTTGAGCGGCAGAGGTCGACCGCCACGTGCTGatttgttcttttgttttggtcAGCGCTGGGGAGAAGGCAATCCACTTTCAGATAACCTTGTCTACGCATGCGTTACTCATTTGCTTGCTGAAAGCCAGATGAAGACGTTCTTCTCGCCACGTGGTGAAGTCATGGTGTCCGAACCGAATGTTCTGGATAATTTAGCGTTTCAGATTGACCAGTTGAATGTAAATCCTCCACAATTGGATGCCTGACTTTAATTGCCTGCTTAGCTGTCCTTGTAGGGGCCTGCTTTAAAGGCCCATCACTACCCGGCAAGCATTGCTTTTAAATTACCATAAATCATTTTGGCTAAGTATTTTTAAATGGTCTAAATCTTTAGTATGGTCTGAGCGATTCATTAGTTTTAGCGACTTTTGTAAGCAAGGCAAACTCAAAATGTTACATCgtcatttatttatattgcTAGACAACCTTTTCTGGCTGTGTGGGTgaagaaaagttgaagtttCTTTCTTAAAGATTCATTTAATCACCTAAAATAATAGTTATTTGAATAGTTACTCAACGAAAATACACGATATTTAGCTTGCTTCACAGACCGGATTTTTATACCTTCAAGGTCGGTGAGATGGATCTCTCAGGGAGttcttagaacaagaaatctgtttgAGTTTTCACAGACCcagttttgatactttcatggtttgtgacgcaggctaaCTTAGGATGTTCTTAGAACAAAGAATATGTTGAGTTTGCACAGAccttgttttgatactttcatggccTGTGATGAAGGCTAACTTAGGGAGTTCTTAGAACAAAGAATATGTTGAGTTTGCACAGACCTTCGTATGGATAAAGCTATGCTAACTTTTTTAAGCCTTTTGTTCTACCTGTCCTTAGCGCCAAAGGCCACTGGGTTTAAATCGATGAATCAGAATCATCAGCTTAGCTGTCACTTTTTAACTTATATCAATTTCTTTGTATGTTATTTGCAGTTTCAATCTGTAGATTAGTAGATCTTAAGCAATATTCTTGCTGCTTTCGAATGTAAATTTACTGGCACTTGCATCATGGGTGTAGGaattacaaaatttaattgacatattgaccccccccccaccgTTCACACGATTCTCCAAGAAACGAATGAGGAATCAGGAAGAGATGATTTTTGCTTTATAAATCAGTTTATTCAATATTCGTTTCATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64287	Interferon regulatory factor 4 OS=Mus musculus OX=10090 GN=Irf4 PE=1 SV=1
Q15306	Interferon regulatory factor 4 OS=Homo sapiens OX=9606 GN=IRF4 PE=1 SV=1
Q00978	Interferon regulatory factor 9 OS=Homo sapiens OX=9606 GN=IRF9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000568 (this species only) · gene tree & orthology
Transcription factor family	IRF · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10401 all species →	IRF-3	Interferon-regulatory factor 3	Family	Interproscan
PF00605 all species →	IRF	Interferon regulatory factor transcription factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019471 all species →	Domain	Interferon regulatory factor-3	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR001346 all species →	Domain	Interferon regulatory factor, DNA-binding domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR019817 all species →	Conserved_site	Interferon regulatory factor, conserved site	Interproscan
IPR017855 all species →	Homologous_superfamily	SMAD-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11949 all species →	INTERFERON REGULATORY FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0002376 all species →	Biological Process	immune system process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09445	IRF4; interferon regulatory factor 4	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.