Gene detail

Detailed information of ENSSJYP00000008330.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_031750341.1, nucleolar protein 11 isoform X1 [Xenopus tropicalis]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

ENSSJYT00000008689

ATGGCGGCGGTAACAGACCTGTTTGAATTACTAAAAATCGCACGTTCACAAAATGTATACACGGAGTCGTTAGGCAATGAAGACAGTATTCTAATATCATCCAAAGAAAATGGATTCATTGCATTCAACCTTGAAAGCCACAAGGTCCTACAAAGCTGGGCTTTATCACAGTGCAAAAGTCTAAATGCACCagcaatatttgataaaaatacagCTACATACTACTGTATAATGAATGAGAAGGAGCTACTTTCATGGAAGAGTGAAGACTCCAGCCCATCACAAGGATCAATGACTATGCTTAgtcaaaaaaattcatatGCAAAACTACAGTCAATATCAAAAGAGAACACTTCAGATGTTATTCTTTTTGATAAGACTGGAAAGGCattcttgaaatcaaaactAGAAAACCAACATTACTTAGGCCAATCTCCATGTTCTCCTGTATCCAACACAAGGTATATCTGGAGTGATGTTGTGGAAAAGGATGATTCTTCTCATGTTTTTGTAGCTGTTGTCACTGAAGAGGCTCAGAAATACAGTTTGACTGTTTTGATGCTGAAGAAAATGGAGGATTGTTTTGACTTTGTAGAATCTCACAAATACTTAATTGATCCAGTATCAAAGGGATGTCATGTAATATCTTGCACTCTTCAGAAACAAAAGTTGGTTGTTCTATGGTCTGATAATAGTATTTATTCGTATGAGTTGCCTTTGCTAGCACAGGATGTGCTAAACACAAGCACACATCCAGCTGGTTTGATTGGTAAAACACTTGTTCATACTCTTCAACCAGAGTTCAAAGTGTCTGGTAAAGGACTATCCAAGGCAAAAATTGGTTCTATCAACCAAGAacatttgtttgttgtttcaaAATGCATCATAGGtgaaaaaaagcaagGTCTAATCTGTATAATAAATACCAAGTTTGGCACGGAACAAGCGAGGACTATATTCTCACTTTCATCTGTCAATGATACGTCATCAAAAGATCAGGATGTTCTATCAGCAAGATATTGCAATGGCAAAGTCATTGTTGCATTGTCGAGTTCAATCATCTGTACCGAGTGCAGCGTATTTTCATCCTGCCTTGCTTCTGCTCTcggaaaattaaaaagctCTGACGTAGTGAATTGTTTGAAGCCCGAAGGAAAGTCGCATCCTCTGCTGATaccaagaaaattgaaaagaccGTTTAAGgATGCAGAAAAGGCTAAAATGCAGctaaatgaagaagaagaaggatgGAAATCAATTCAGAAGTTAGGAGATCCATTGAAAaCACCAACAGTCGAAGCATTTAATCGAGaacttaatttatttttgaagaagCTTCATATCAGAGttatttttccaTCAGTCACTCGAGACTCCAGCCAGGCAGAGACTGAAAGGCAGATCGAACAAAATGAAGAGCCgtcaaagaaaaagataaagaaagaatTAGAGGCAAAGGACAAGCGGATGATGATTCCAGATCAGTTTGTGCAAACTGTTGTAAAAAGATGCGTAGAAGACGATACATTGTGGTCAAGTTCAGTTCTGAATCCATTATTAAAGCTTAGATGTATCTCTCCTAGGAATTGCTCTGACATCATAACAAAATGCATCAACACAAATTCCGTGATTATTCTAAAGAAGTGTTTCAAATATACAGATGGCCTAAGTGAAAGAGACATCGTAAGGAGCATTCAATATATTCTCAGCCGGAAAACAGACAAAGAGACTTGGAAAAAGCAACAGGTTTTGAAAGGTCCTACTCTACCAGATCTAgtgaaaattgaagaaacatcattttcattgctTCTCAAGATATTAAATTATCCCTGTAATGAAtactttttgcaagaaatgctGCGCAATTTGTCAAGAGAGGAAACAAAGGAATTGTTACAAGTTTTATTCGAATTGATGGCACGCCAATTGACAAATTACAAAGCATTTCTCAGTCATGAAAAGGTTATCGATTGGATTTCCATGATtgtcaatgcaaaatttaCTACAATCATCCTCTCAAATGATGCCTATCGTCTAAtcaagttgataaaaaaggcTGCTCGAAACCAGaTGAACTATTTTAATAGACTACAGCAAGTTGAGCCTTTCCTTCTGCAACTAAAGGGAACGTACAAAATGCCAAACATTGCTACACCAGTTGGCGCTTACTCAGTTGAAACGATAACTATATGA

Transcript

ENSSJYT00000008689

CCATGCTTGAACACAAGGAACATGGCGGCGGTAACAGACCTGTTTGAATTACTAAAAATCGCACGTTCACAAAATGTATACACGGAGTCGTTAGGCAATGAAGACAGTATTCTAATATCATCCAAAGAAAATGGATTCATTGCATTCAACCTTGAAAGCCACAAGGTCCTACAAAGCTGGGCTTTATCACAGTGCAAAAGTCTAAATGCACCagcaatatttgataaaaatacagCTACATACTACTGTATAATGAATGAGAAGGAGCTACTTTCATGGAAGAGTGAAGACTCCAGCCCATCACAAGGATCAATGACTATGCTTAgtcaaaaaaattcatatGCAAAACTACAGTCAATATCAAAAGAGAACACTTCAGATGTTATTCTTTTTGATAAGACTGGAAAGGCattcttgaaatcaaaactAGAAAACCAACATTACTTAGGCCAATCTCCATGTTCTCCTGTATCCAACACAAGGTATATCTGGAGTGATGTTGTGGAAAAGGATGATTCTTCTCATGTTTTTGTAGCTGTTGTCACTGAAGAGGCTCAGAAATACAGTTTGACTGTTTTGATGCTGAAGAAAATGGAGGATTGTTTTGACTTTGTAGAATCTCACAAATACTTAATTGATCCAGTATCAAAGGGATGTCATGTAATATCTTGCACTCTTCAGAAACAAAAGTTGGTTGTTCTATGGTCTGATAATAGTATTTATTCGTATGAGTTGCCTTTGCTAGCACAGGATGTGCTAAACACAAGCACACATCCAGCTGGTTTGATTGGTAAAACACTTGTTCATACTCTTCAACCAGAGTTCAAAGTGTCTGGTAAAGGACTATCCAAGGCAAAAATTGGTTCTATCAACCAAGAacatttgtttgttgtttcaaAATGCATCATAGGtgaaaaaaagcaagGTCTAATCTGTATAATAAATACCAAGTTTGGCACGGAACAAGCGAGGACTATATTCTCACTTTCATCTGTCAATGATACGTCATCAAAAGATCAGGATGTTCTATCAGCAAGATATTGCAATGGCAAAGTCATTGTTGCATTGTCGAGTTCAATCATCTGTACCGAGTGCAGCGTATTTTCATCCTGCCTTGCTTCTGCTCTcggaaaattaaaaagctCTGACGTAGTGAATTGTTTGAAGCCCGAAGGAAAGTCGCATCCTCTGCTGATaccaagaaaattgaaaagaccGTTTAAGgATGCAGAAAAGGCTAAAATGCAGctaaatgaagaagaagaaggatgGAAATCAATTCAGAAGTTAGGAGATCCATTGAAAaCACCAACAGTCGAAGCATTTAATCGAGaacttaatttatttttgaagaagCTTCATATCAGAGttatttttccaTCAGTCACTCGAGACTCCAGCCAGGCAGAGACTGAAAGGCAGATCGAACAAAATGAAGAGCCgtcaaagaaaaagataaagaaagaatTAGAGGCAAAGGACAAGCGGATGATGATTCCAGATCAGTTTGTGCAAACTGTTGTAAAAAGATGCGTAGAAGACGATACATTGTGGTCAAGTTCAGTTCTGAATCCATTATTAAAGCTTAGATGTATCTCTCCTAGGAATTGCTCTGACATCATAACAAAATGCATCAACACAAATTCCGTGATTATTCTAAAGAAGTGTTTCAAATATACAGATGGCCTAAGTGAAAGAGACATCGTAAGGAGCATTCAATATATTCTCAGCCGGAAAACAGACAAAGAGACTTGGAAAAAGCAACAGGTTTTGAAAGGTCCTACTCTACCAGATCTAgtgaaaattgaagaaacatcattttcattgctTCTCAAGATATTAAATTATCCCTGTAATGAAtactttttgcaagaaatgctGCGCAATTTGTCAAGAGAGGAAACAAAGGAATTGTTACAAGTTTTATTCGAATTGATGGCACGCCAATTGACAAATTACAAAGCATTTCTCAGTCATGAAAAGGTTATCGATTGGATTTCCATGATtgtcaatgcaaaatttaCTACAATCATCCTCTCAAATGATGCCTATCGTCTAAtcaagttgataaaaaaggcTGCTCGAAACCAGaTGAACTATTTTAATAGACTACAGCAAGTTGAGCCTTTCCTTCTGCAACTAAAGGGAACGTACAAAATGCCAAACATTGCTACACCAGTTGGCGCTTACTCAGTTGAAACGATAACTATATGATTTGTAGtgtttttatgcattttatcatatcatGTTAACAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6INI5	Nucleolar protein 11 OS=Xenopus laevis OX=8355 GN=nol11 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004889 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08168 all species →	NUC205	Nucleolar protein 11 N-terminal domain	Domain	Interproscan
PF20998 all species →	Nol11_C	Nucleolar protein 11 C-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012584 all species →	Domain	Nucleolar protein 11, N-terminal domain	Interproscan
IPR048897 all species →	Domain	Nucleolar protein 11, C-terminal domain	Interproscan
IPR042859 all species →	Family	Nucleolar protein 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15633 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000008330.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.