Gene detail

Detailed information of ENSSJYP00000008664.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: ABY71240.1, Sox9, partial [Leucoraja erinacea]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B7ZR65	Transcription factor Sox-9-A OS=Xenopus laevis OX=8355 GN=sox9-a PE=1 SV=1
Q6DFF5	Transcription factor Sox-9-B OS=Xenopus laevis OX=8355 GN=sox9-b PE=2 SV=1
Q6F2E7	Transcription factor Sox-9 OS=Xenopus tropicalis OX=8364 GN=sox9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006735 (this species only)
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR050917 all species →	Family	SOX Transcription Factors	Interproscan
IPR021934 all species →	Domain	Sox, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45803 all species →	SOX100B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18435	SOX9; transcription factor SOX9 (SOX group E)	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.