Gene detail

Detailed information of ENSSJYP00000009130.1 in Catostylus mosaicus

Genomic Location: chr2:15704739...15732237
NR annotation: XP_047138741.1, importin-4 [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSJYT00000009496

ATGAGTCTTGCAGAAAATGGGGATGCAGACGAGGAGAGTGATCCTAGTCAAGGTCATGgggacgatgatgatgatgatcttgGAGAAATGGAAGGAAGCACTTTGCCATCTGTGGCAGCacagGCTCTAGATCTCCTGGCTCTTCATCTCCCACCATCGAAATTTATTCCACAAGTGatgTCAATGATTCAGAGTCATTTGGATAGTACCAATCATTACGAAAGAAAAGCTGGTTATATTGCTTTAGGCGTATTGGCTGAAGGTTGTTCTGATTACATTAAAAACAGacaTCTTCATGAAGCGCTACAGACTGTTTCAAAAGgtttttctgaTGAATCTTATGTTGTACGCAATGCTGCATTGTTTACTCTTGGTCAATTTGCCGAGCATTTCCAGCACGATATGAATGTGTTTCATGGAGAATTAATTCCAGCTTTGTTGTCACAAATGCAAAGTTCCTTAGTGAGCCAAGACCCAAAACAGAAGACGACACTAACAAGAATATTTTACGCTTTGGAATCGCTTTGTGAAAATTTAGacaaatctgaaatttcactttatttacaatcattgatagaaacatttttgaatACAATAAAGGCCTCAAAAGGACTTTATGCTACTGAATTAGCCATTAGTGCCATCGGATCATTAGCAACTTCAGCCAAAGATGAACTGTTGCCTTATTTTCCTCATATAATGAATCACCTAAAGGTTTTCTTACAAGAACCGGCAACTCTTGAAACCTCCAGGCTTCAGGCTCAGGCAATTGATACACTCGGATCTCTTGCAAGGAACATTGgacaaaagaatttcaagttaATGGCTGATGAATGCATGCAGCTTGGAATGGCCTTGCTTGAGGATTCAGATGATCCTGACATTAGACGTTGCACgtaTGGTCTATTTTCATCCCtttcaacaataatgaaaagtGATATGGAGAAATATTTGAGCCAAATTGTTCCTAAAATGATCGAGTCGTTGAAATCAACTGAAGGTATAATGGCACAATTTAACGAAAATGAGCCAGCCGTCCTCCTGGATGATCTTACCGGTGAAGGTGTAACatcagatgatgaagatgacgaCGATATTGAAGGTTACACGGTTGAGAATGCATATTTAGACGAGAAAGAAGACACTTGTAATGCAATTGGTGAAATAGCTGAGCAGACAAGGAACGCTTTCCTGCCCTATTTGCAAGAGTGCTTTACCGAAGTGCAATTGTTTATCGATGAACCGAATGTAAATTTGCGAAAAGCTGCTGTGATGTCATGTGCAAGCCTCTCCGCTGTTTTAAAATCggttttgaaagaaatgaacGCTGCTGACCAATCTCCAGCAATTGTTTTGACAAACAAGGCGTTTGCATTCGCACTGAATCTGATAAGCAAAGATCGTGATCAATCATGCGTGATGGCAGCGACTGATGCTGTCAATTTAATACTCAAATCATTCAAAGGAGGTGaactgcaaaataaagaaatcattAATGAAATTGCTACAGCAGCccataatttatttttagagaAGACACCCTGCCAACAAGATGGCGACGATTCATATCAAGAAGAGGACGAAGAGTCACAAGCTGAAATGGATgctattttaattgaaaaggcTGGAGACATTCTTCCTCTGCTTGCTCAAGCTGTTGGTGGGGCCATCTTCAAGCCTTACTTCGATGGGTTTCTGCCGCTCCTCACAAAAAGAACGaaaaagaCGTGTGCAGTATCAGAGAGGTCTTTTGCGGTTGGAACCCTCGCAGAGGTAATTCAAGCATTGGAGTTACATGTGACACCATACATTGATCAGTTGCTTCAATTGTTTATGACAACATTAAAAGACAACGATGAAGAAGTCATTAGTAATTCAGTTTTTGCAATTGGAGTTTTGGCAGAATgtggaaaagaaaatgttgtCAAATATTACAGCAACATACTTCAAACACTATTTAGTATTGCAAATGGAAGTCCGTCTAATTTAGTAATGGATAATATTTGTGGTGCAGTGTCAAGGTTGATTATGACTAGCCTCAATGATTTGCCTTTGGCTCAGGTTTTACCAGTTCTAATACATCACCTTCCAATTAAAGAAGATAacagtgaaaatgaaacagtTATAAAATGTCTTTGCTTTCTCTACATCAACGCCTACCCTGCTATCGAATCGTTTATTGGTCAATTGCTTGGTCACATGATACAAGCTGCAATAGTCAAGGAATTGAGTTTAAAATCAGAAACACGTCATTCTCTTCAGCAAGTTTTGAAGGACATTAAGAGTAGATTTCCAACCGATTTTGACAATGTTGTAGCTTCATTGGGAATGAATTATGCCGCCTTTACTTTCCTATCGTGA

Transcript

ENSSJYT00000009496

gcATTGCTCAAATCGCATCTTCTTAAACCATTGTTGGAAACTCTTTTATCGCTAATGAGTCTTGCAGAAAATGGGGATGCAGACGAGGAGAGTGATCCTAGTCAAGGTCATGgggacgatgatgatgatgatcttgGAGAAATGGAAGGAAGCACTTTGCCATCTGTGGCAGCacagGCTCTAGATCTCCTGGCTCTTCATCTCCCACCATCGAAATTTATTCCACAAGTGatgTCAATGATTCAGAGTCATTTGGATAGTACCAATCATTACGAAAGAAAAGCTGGTTATATTGCTTTAGGCGTATTGGCTGAAGGTTGTTCTGATTACATTAAAAACAGacaTCTTCATGAAGCGCTACAGACTGTTTCAAAAGgtttttctgaTGAATCTTATGTTGTACGCAATGCTGCATTGTTTACTCTTGGTCAATTTGCCGAGCATTTCCAGCACGATATGAATGTGTTTCATGGAGAATTAATTCCAGCTTTGTTGTCACAAATGCAAAGTTCCTTAGTGAGCCAAGACCCAAAACAGAAGACGACACTAACAAGAATATTTTACGCTTTGGAATCGCTTTGTGAAAATTTAGacaaatctgaaatttcactttatttacaatcattgatagaaacatttttgaatACAATAAAGGCCTCAAAAGGACTTTATGCTACTGAATTAGCCATTAGTGCCATCGGATCATTAGCAACTTCAGCCAAAGATGAACTGTTGCCTTATTTTCCTCATATAATGAATCACCTAAAGGTTTTCTTACAAGAACCGGCAACTCTTGAAACCTCCAGGCTTCAGGCTCAGGCAATTGATACACTCGGATCTCTTGCAAGGAACATTGgacaaaagaatttcaagttaATGGCTGATGAATGCATGCAGCTTGGAATGGCCTTGCTTGAGGATTCAGATGATCCTGACATTAGACGTTGCACgtaTGGTCTATTTTCATCCCtttcaacaataatgaaaagtGATATGGAGAAATATTTGAGCCAAATTGTTCCTAAAATGATCGAGTCGTTGAAATCAACTGAAGGTATAATGGCACAATTTAACGAAAATGAGCCAGCCGTCCTCCTGGATGATCTTACCGGTGAAGGTGTAACatcagatgatgaagatgacgaCGATATTGAAGGTTACACGGTTGAGAATGCATATTTAGACGAGAAAGAAGACACTTGTAATGCAATTGGTGAAATAGCTGAGCAGACAAGGAACGCTTTCCTGCCCTATTTGCAAGAGTGCTTTACCGAAGTGCAATTGTTTATCGATGAACCGAATGTAAATTTGCGAAAAGCTGCTGTGATGTCATGTGCAAGCCTCTCCGCTGTTTTAAAATCggttttgaaagaaatgaacGCTGCTGACCAATCTCCAGCAATTGTTTTGACAAACAAGGCGTTTGCATTCGCACTGAATCTGATAAGCAAAGATCGTGATCAATCATGCGTGATGGCAGCGACTGATGCTGTCAATTTAATACTCAAATCATTCAAAGGAGGTGaactgcaaaataaagaaatcattAATGAAATTGCTACAGCAGCccataatttatttttagagaAGACACCCTGCCAACAAGATGGCGACGATTCATATCAAGAAGAGGACGAAGAGTCACAAGCTGAAATGGATgctattttaattgaaaaggcTGGAGACATTCTTCCTCTGCTTGCTCAAGCTGTTGGTGGGGCCATCTTCAAGCCTTACTTCGATGGGTTTCTGCCGCTCCTCACAAAAAGAACGaaaaagaCGTGTGCAGTATCAGAGAGGTCTTTTGCGGTTGGAACCCTCGCAGAGGTAATTCAAGCATTGGAGTTACATGTGACACCATACATTGATCAGTTGCTTCAATTGTTTATGACAACATTAAAAGACAACGATGAAGAAGTCATTAGTAATTCAGTTTTTGCAATTGGAGTTTTGGCAGAATgtggaaaagaaaatgttgtCAAATATTACAGCAACATACTTCAAACACTATTTAGTATTGCAAATGGAAGTCCGTCTAATTTAGTAATGGATAATATTTGTGGTGCAGTGTCAAGGTTGATTATGACTAGCCTCAATGATTTGCCTTTGGCTCAGGTTTTACCAGTTCTAATACATCACCTTCCAATTAAAGAAGATAacagtgaaaatgaaacagtTATAAAATGTCTTTGCTTTCTCTACATCAACGCCTACCCTGCTATCGAATCGTTTATTGGTCAATTGCTTGGTCACATGATACAAGCTGCAATAGTCAAGGAATTGAGTTTAAAATCAGAAACACGTCATTCTCTTCAGCAAGTTTTGAAGGACATTAAGAGTAGATTTCCAACCGATTTTGACAATGTTGTAGCTTCATTGGGAATGAATTATGCCGCCTTTACTTTCCTATCGTGACCTAGCTTGTTAtctatgttatgtcatgtcatttgATTGCAATGCCTTGAATAAGCCTCGGTACTCATTTCAATTATGAATATTCAAATGGGCATTTGACCTAGAGACCAAGCGCTCATTCAATGGTTAGATTTTTCTCccacattgttttaaaactaaaaattgcTTTGATTTGTAAATTATGTTCCACAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TEX9	Importin-4 OS=Homo sapiens OX=9606 GN=IPO4 PE=1 SV=2
Q8VI75	Importin-4 OS=Mus musculus OX=10090 GN=Ipo4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003154 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02985 all species →	HEAT	HEAT repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000357 all species →	Repeat	HEAT repeat	Interproscan
IPR040122 all species →	Family	Importin beta family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527 all species →	IMPORTIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20221	IPO4, RANBP4; importin-4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.