Gene detail

Detailed information of ENSSJYP00000009631.1 in Catostylus mosaicus

Genomic Location: :...
NR annotation: XP_002119186.1, RNA-binding protein 4B-like [Ciona intestinalis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSSJYT00000010002

CTTTGGGTTGTTCGAAAGATGGCGACGAAATTATATGTCGCAAATTTGCCTCAAGAGTATGGAGAACAGGAACTTCATGATCTGTTTGCAATATGTGGACCAGTTGCAGAGCTCgacattatcaaaaattatgctTTTGTGCATATGGGTACCAACGAGGCGGCTCAAAAAGCAGTGGCGAAATACAACAATTCGACTCTAAATGGAAGGGTGATTTCAGTACAGTTTTCAAAGACGCAAAATGTAAATAGAGCAAATAAATCTAGTGTACGGTACGATCGACCAGACAGAATGGTAAGGGGTGGACAAGTTGGTCACTTTCAAAGAGGGGGCCTACGCGGCAGAGGCATGTCACCGGGTATGATGGGGGGAGGAGGAGTTAATTTTGAACGAGGCGACCATGATTTCAGGGGTCGTGGCGGATTTCGTGGGGGAAGAAGTGGGCCAGATAGTTTCCACAGAGGCAAACCGTATGACAGAAATCCAAATTTTAATCACAATCAACCACAAACTGCCAGCAATAGTAGCAATTTGAAGGCCATTCAGCCAATGGGTCCGGATTTTACTAGTCAACCACAAAGCCACACTAATCTGAAAATGGTTCAAAACCAACAGAACATGTTGTCACCTCAAAATAACCAAGCTGTGAGAATGCCAATACAAGTCCAAATACGACCAACAGGCGGAGGGCTGCAACAAATACCTGTACAAGGCAACAATCCAGTTATGCATCCCCAACATCCGAATGTTCAACCACACCAAGTCATACATGCACAGCCACAGATGGTCCCACAAAATATTGCATACCAGCAAATGCAGCAATACAGAGAACTACCACCTCAAGCACAAGCTATACCTGTTACCCCCCAGCAAATGGCTGGTCCAGGTGTTATTCAGCAACAGCAGATGCAAGTAGGGCAAACTGGCCAGCCAATGTCCAATGTCCAGTCGATGGTACAACCTGCTGGCATGGCTGCTGGCATGAACTATCAGCAATCTGGCAACCCACTTCAAGGGTATACTGTTTATGAGAGATATGTTGATTACAGGAATCCACAAACTGGGGATGTACAGCAAGTAGCATTGCAAAATCAGGTCCCAACTGGAGGCGGTATGCCTGCTGCTGCAGCTCCTATTTATCATGGTGATAATCAAATTGCAAGCAAGGATCCATATGCAAATGCTCAATTGATGTATGAAAGGCAAGCTGCAGCCACTTCAAGAGCTGCCATCTATGCTTTCCCGAACTATGGAGGCAGTCCTGCAACAACCATGATGTCAGGTACAAATATGATGCAAGTCGTTTCCCCTGCCACTGTGATACCATCTGTACAAATGCAGTATCAATAGACTACAGTGCAGCAAAACCAGAACTGTAAAGAGGTTTAACAGGTAACATGTATGTTTTGTGATTTTACTCTCCAGTGTAAGGATTATAGGCTTCACAAGgattttttgttgatataCATACTTGTCAAAGTTGTCTCGAATTTTCATATTGATATTAACTAAAGATCTTTAGATAAAGATATCATGCTGGAAGTATTTTTATAGCAATGAATAACAGTCAGCTATCCAAACTCTATGAGCAGACATATGGACTTTTCACATCATTTCTTTAACAGAAGGTAaattattttccattgatGGTCAATGGCTAATAGAAGCTATGTCACCAAGGCTTAGtttcaaatctttgattgCCTGGCATGTGAGACACACCACCCTGTTTAAGCCACTTGGATGAGAATCCATGAACAAACACTGCAAGATTTCtgaatgatattatttttaacaatattattttaaacaaaaggtGTGATAACAACTGTTTTGAAAAGCGCCTCATAGGCCTTCCCTAGAGCACAATTTTTGTCCTACGTGAAATCATAATACAATATCCAACTCTCTGCAGTATGCTTTGGAAGTATAGCTATTTCTTATATTTAGAAGGTATTCTTAAGTAGGAAGTGTTTTATTCTGTTGATAGTTTCGTTAATCGTGACCCAATACACGTCTGCTTTGTCATGTATCTATTTGTTATATACCATTTAATTGTCTGGCGA

Protein

Uniprot

Uniprot term	Description
Q94901	RNA-binding protein lark OS=Drosophila melanogaster OX=7227 GN=lark PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan