Genomic Location: chr19:5736950...5741110
NR annotation: XP_038067305.1, succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [Patiria miniata]
Species Catostylus mosaicus · all data for this species · gene families
| CDS |
| ENSSJYT00000010029 |
| Transcript |
| ENSSJYT00000010029 |
| Protein |
| ENSSJYP00000009659.1 |
| UniProt accession | Description |
|---|---|
| Q96I99 | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=SUCLG2 PE=1 SV=2 |
| P53590 | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa OX=9823 GN=SUCLG2 PE=1 SV=2 |
| Q9Z2I8 | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Mus musculus OX=10090 GN=Suclg2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001647 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08442 all species → | ATP-grasp_2 | ATP-grasp domain | Domain | Interproscan |
| PF00549 all species → | Ligase_CoA | CoA-ligase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017866 all species → | Conserved_site | Succinyl-CoA synthetase, beta subunit, conserved site | Interproscan |
| IPR016102 all species → | Homologous_superfamily | Succinyl-CoA synthetase-like | Interproscan |
| IPR005809 all species → | Family | Succinate--CoA ligase-like, beta subunit | Interproscan |
| IPR013650 all species → | Domain | ATP-grasp fold, succinyl-CoA synthetase-type | Interproscan |
| IPR013815 all species → | Homologous_superfamily | ATP-grasp fold, subdomain 1 | Interproscan |
| IPR034722 all species → | Family | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial | Interproscan |
| IPR005811 all species → | Domain | ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11815 all species → | SUCCINYL-COA SYNTHETASE BETA CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004776 all species → | Molecular Function | succinate-CoA ligase (GDP-forming) activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006099 all species → | Biological Process | tricarboxylic acid cycle | Interproscan |
| GO:0006104 all species → | Biological Process | succinyl-CoA metabolic process | Interproscan |
| GO:0042709 all species → | Cellular Component | succinate-CoA ligase complex | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01900 | LSC2; succinyl-CoA synthetase beta subunit | EC:6.2.1.4 EC:6.2.1.5 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
