Gene detail

Detailed information of ENSSJYP00000010948.1 in Catostylus mosaicus

Genomic Location: chr6:14561613...14564614
NR annotation: XP_033639785.1, mediator of RNA polymerase II transcription subunit 16-like [Asterias rubens]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSJYT00000011436

ATGCAGAAGCTATTTAAAACAGAATGGGACAAAGACGAGTCTGGATTGCTCTTCAAATCAAGAATTGGACAGCCAACATGCACGTGGTCTGCAAGAAACCTGGTTGCTTTTACAACCGGATTCGTGGAATCAAACGAGGCTAGGCCATGTTTGTCAACAGTGACTATCCATGTGATGTGCCCAGAGTATCCGTGGGAAGTCTACCATATAAAAACGGATTTTAATGATCGAATTGAGCATTTAATATGGGATAAAAACAGCACAAGGCTGCTTGCAATCGATTGCAATGGAGTTTGCAAAGTTTATGGAATGCataaaaacatgataaatTGTTGGGAGGTCGTTCATGAAGTAAATTTTGAAGGGAGAGTTGTATGCACTGCTTGGCTTGATCCAGGGCCTAGGGttatttttgatgcaaaagcCAGTCATGCTAACTTGCTTGAAAAATTCCCGAAACGATACATCAAGTCATGCCTTGCTGATATTGCAGGCCTCAACAAAGATGGCTTTGTTGTGACCACAGAGACTGGAATAGCCAGTGTTGTTCTTGTTGAAAAAGGTTCTAAAACTCTGAAGGCTCATAAAACTAAACTGTTTGCAAGTAGATGCAGAGTGCTGCTAGGTGATGTGTGCTTTAAGGAAGACGGAAAGGTTTACATCATTTTGGCAACTGACAGAAGAGTTGTTGAGTTTTTTGTTCTGAGCTTGAGACTAACCAGCTCTAAGGTTGATATTTCAGTAGAAATTTCTCCATGTATTGTCCCGCATCTCATATCAGATGACGAATACATGACATACCATGTCTCATGTGTAAAGTTTagcaatgaaaagaacttAGACAAGATTCTGATTTGTACAGAAAGTGGTTCCATGACCTGTTTCAAATACTTTGAGTTGAAGATAGAAAAAGCAGCTCTTCAGGCCGTGTTGCAAAGAATGCAACAAACACCAAAGATTATAAATGTTAAAGAATGGGTTTGCTCGAAATCAGTGACAATTAGGGGACGGATTGCTTGTATAGCCCTAAGCAGGATCATCAATTCTGGCCAATCTGGAAGTGATGTGCCTATATACCCTACAATTTTAGTTGCAACTAAAGAGGGGTCATTAGTCACACTATCATCTACTTTGTCTGACATTGATACTTCAACCCTCTTGTTTCAAGACGAGTCAATAACAACCTTAGTGTACTCTCCGAATGATACTTGCATCCTATCTGTCACAGATAGTGGCAACATAGCAGCATTTCAGGCCTGCTCACTCAATTCTATGGCAGAAAGTGTTTCAGTTAAAACATGTGTTAATCTTTTTGAATACTGTCTGTTAACTGGAAGCTCCCCATGGGATGTGACCATATTTGCTGCTAGGCATGGAGAGAAGTTTTTAGAGCAGTGCTGTCAGTACCTAAGAAGCAATCTTACAAGTCAGCCGTCAATGACGCAAGAAAGAATGTCAGCTTCCCATGCTCAGATCCAAGCAATGATCTACAAGGGTTTAGATGGTCTTTATTTTGGCTCAAATGAAAGCTACAACTTCCTCATGTTGAGGGCAATATACTGCTACCTTCATTCTACAATCAATTCCATGCCATGTGAGAAAGATGCACAAATTCTGATGAAGATTAAATCAACATGCAACAGAGTTTTAGATTTTGATCTGGCTAAAGTTTTACAGGTTATAGATGCTAAGGATGCATCATTTGATTCTCATATGATTTCAACAATGCATTATCTAACCCAATGGATTGCAAATTACTCAATTCAAATATGTAGATTGGTTCTCTCTTCTATCAAGATGGGAACCAGCAAGCAAATTTTACCAGTTGTGAGCGTTCAAGGTTTGAAGATGCTGAGGGAGATGCTTTGCCTGGTTTATCTTTGGGGTCAGTCTTGCCCAGGGTGGCAGCCACACTTTCTAGAGTTAGGATTTCCATCAGAAATTATTTCTCAGATCTTCAAACTTGTATCAAAGCTGTGTTTGAAGTTGATGCAAAGTGACTCTAGTAAAGATGTTGTAAGCGAGGACGAAATTCCAATGAGGGCTCATGCAATGATGTACCAAACACCAAATGCCAATGACCCAAAATGTGGTGCAATCAGCCAGTGCATGTACcaaagcaatgattttgattattatgTTTTCTCATCTGAAGAAGATACGATGACAAGTGCACAAAAGTACTCTTTGCCTCAGCCTCTTGAGCAAGGAATCTCCTACAATGATGCCTcaagtaaatttttctttgatgcATTGAACCACTTTCAGACATCACTCATGAAAGGAGAGACACTAAAGCAATGCATCCAATGTTCTTGTCTGACCCTTAGCATGACAAATTCCGCTCGTTCATTGCTTGGCTCATGGAAGGAGCAATGGAGAGATGTTTGCTTCTGTGGTGGGTTGTGGAGAGCACTTGATgaacaacgcaaagggGTAGGAATACGATGCAAAATACGACAAgattaa

Transcript

ENSSJYT00000011436

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004824 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20719 all species →	Med16_C	Mediator complex subunit 16, C-terminal	Domain	Interproscan
PF20718 all species →	Med16_bridge	Mediator complex subunit 16, central helical bridge	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048338 all species →	Family	Mediator complex, subunit Med16	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR048339 all species →	Domain	Mediator complex subunit 16, C-terminal	Interproscan
IPR048616 all species →	Domain	Mediator of RNA polymerase II transcription subunit 16 , central helical bridge	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224 all species →	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15159	MED16; mediator of RNA polymerase II transcription subunit 16	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.