Gene detail

Detailed information of ENSSJYP00000011018.1 in Catostylus mosaicus

Genomic Location: chr8:1302675...1310672
NR annotation: XP_032221427.2, ras-associated and pleckstrin homology domains-containing protein 1 isoform X2 [Nematostella vectensis]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSSJYT00000011520

ATGGAAGTTCAAAATGGGGAAATAGTGAAAGTTCTAGATGCTGTGCTTGCATACCTTAACATCACCCTGCCTAACCAGGAACTATCACCAGATGCAGAAATGGGAAGAGAAAGTCTTGCAAACAGGGTCCAGAGCCTTGCTGAcaaattaaatgcaaattcaAGCAAGCCAACAGAAATTCCAAATGAAGTCCCTGCTGTTGAAGAAGAGTTGTATGATGATGTTGCAGGGGCTGCTGCTGGTGATAAGAATGAGCCTGCTCCTGCAAACAGACAGAGCTGTTATATGGACATGACTCAACCAGGAGCAGTTGGTGATGATACAATGGATGGGAATGCTCCAACCGATGAATTGGCCCAGGATGAAGAATATGAAATTCCTGCTGCtgaaaatcatataaaaaagaatactGATGGCATTAAACAGAGTGATGCTCTTATCCAGGATGAAGAATATGAAGTTCCTGCAAACGAGGTTGTAAAATCAGAGGTCACTGAGCTTCTGGAAGAAGATGAACCAGAAGAATATGATGATATTACAAACCAAAACGGAGAGATGGAGGAGGTGTATGATGATGTTTCAAACACAAATGGTAATGATGATTCCCAGTTTGAATTGACAGATGATGCActtcttttgaaattgaaaggaCTGGAGAATACTAATCCAAAAAATATTCTTGGAGGCTCACTCTTTTCAGGTTGGCTTCTGAAGCAGAAGAAAAAGTTTATGTCAAAATGGCACAAAAGATATTGCATTTTGAAAGAGCAATTCCTATTTTACTATCAGTCAGAAACTGATTCAAAAGCATTGGGTGTAGTTGTTCTTCCTGGCTACAAATTATGTGAGGAAAAATCCAATggtaaagaaaaattgacatttaAGCTGGTGGCAACTGGAAAAGGAAGATCAACATATTCAttcCAAGTCAAATCTAAGAATGAGTATAATGCATGGATGTCTGTCATCTCACCAATCTGCTCACAGAAATTATCACGTCTTAGTAGTGATGCTTTCAACCGTGTTGCAAAAAAGATGGATGCTGAAAGTGAAGAAGGAAGTGCAGGTGAAGCAATTAAAGCTAAAGAACCAGCTATTGCAGAGGAAGGAGGAGATATGTACGAGTTTGTTCCCGAGGATGGCTTGGCATCTACACAGAATCAAGTTGGCGTTCATGTCGAAGAAGAATATGATGATCTTGTTGATGGAAAGATTGACCAAATGAATCAGCAACAAGGAGAACAAGAAGATTTGTATGAATGCATTGAACCAAACCAGCCATCTAGTATTCCACCCCGGCCAACTCTTGGTCACTTACCTCCGCCACTTCCTTCCTCCACAATGTCACAGAGAACTCCAACTTTGCCTGAGCGGAATACAAAGCCAGCAGATACAAATGAAGAGCTCTATGATGATCATATTGATCGCAAAGATGACATGGTACAAAAATCTGCAGCAGTGCCTGCTGAAGAACTCTATGAAGGAATTCCTGGAGAAGACTATCAGCCAGAGGCCAGCCAAAATACACCTGtgcAAGAAGATCTTTACGAGGACATTGCACCCTTCCAGCAAGGCATTTCAAATGTCCCAACTACCATCCCACCACGACCACCAACTTCAGCACCTCCTCCTATGAATCCAGTTCCATCTTTGCCAGCACAAGGACCAGCTATACCTGAGAGAAGACCCATGCAAGGGACCAAAGATGACCAAGCACCTCCATTACCACCATCCATCCCAAGCAGAGGTGACAGAGGTAAAGAGACAGAAACTGCACCTGTTACAGAAGATAAACCATCTGAGGATGACTTCTCATATGAAAACGTCTACATTGGTAAAGAGACGTACTCTGCGAAGGAAACAGATGAACTTGCTTTTGATCGTGGTGATTTGATTTACATACTCCAAAAGGTTAATACCAATTGGTGGATTGGCTGTATGGACAAGAAAGTGGGTTTGGTTCCAAGTAACCTACTGATTGCAGGCTTTGCTCATTGA

Transcript

ENSSJYT00000011520

CAATATTGTTGATCGACTTCCTCGTTTCGATTGCTCAAGAAGAAAAACGAACGGATGTTAAAGATccttaaagatatttttgtgATAGATTGGCAGAAAAAAGACCACTGTTTCAGAGCTTTTTAAGACATCGTATGGGTTTTGGGGATATATAAAGAGACCGAAGATCGAAAATGGAAGTTCAAAATGGGGAAATAGTGAAAGTTCTAGATGCTGTGCTTGCATACCTTAACATCACCCTGCCTAACCAGGAACTATCACCAGATGCAGAAATGGGAAGAGAAAGTCTTGCAAACAGGGTCCAGAGCCTTGCTGAcaaattaaatgcaaattcaAGCAAGCCAACAGAAATTCCAAATGAAGTCCCTGCTGTTGAAGAAGAGTTGTATGATGATGTTGCAGGGGCTGCTGCTGGTGATAAGAATGAGCCTGCTCCTGCAAACAGACAGAGCTGTTATATGGACATGACTCAACCAGGAGCAGTTGGTGATGATACAATGGATGGGAATGCTCCAACCGATGAATTGGCCCAGGATGAAGAATATGAAATTCCTGCTGCtgaaaatcatataaaaaagaatactGATGGCATTAAACAGAGTGATGCTCTTATCCAGGATGAAGAATATGAAGTTCCTGCAAACGAGGTTGTAAAATCAGAGGTCACTGAGCTTCTGGAAGAAGATGAACCAGAAGAATATGATGATATTACAAACCAAAACGGAGAGATGGAGGAGGTGTATGATGATGTTTCAAACACAAATGGTAATGATGATTCCCAGTTTGAATTGACAGATGATGCActtcttttgaaattgaaaggaCTGGAGAATACTAATCCAAAAAATATTCTTGGAGGCTCACTCTTTTCAGGTTGGCTTCTGAAGCAGAAGAAAAAGTTTATGTCAAAATGGCACAAAAGATATTGCATTTTGAAAGAGCAATTCCTATTTTACTATCAGTCAGAAACTGATTCAAAAGCATTGGGTGTAGTTGTTCTTCCTGGCTACAAATTATGTGAGGAAAAATCCAATggtaaagaaaaattgacatttaAGCTGGTGGCAACTGGAAAAGGAAGATCAACATATTCAttcCAAGTCAAATCTAAGAATGAGTATAATGCATGGATGTCTGTCATCTCACCAATCTGCTCACAGAAATTATCACGTCTTAGTAGTGATGCTTTCAACCGTGTTGCAAAAAAGATGGATGCTGAAAGTGAAGAAGGAAGTGCAGGTGAAGCAATTAAAGCTAAAGAACCAGCTATTGCAGAGGAAGGAGGAGATATGTACGAGTTTGTTCCCGAGGATGGCTTGGCATCTACACAGAATCAAGTTGGCGTTCATGTCGAAGAAGAATATGATGATCTTGTTGATGGAAAGATTGACCAAATGAATCAGCAACAAGGAGAACAAGAAGATTTGTATGAATGCATTGAACCAAACCAGCCATCTAGTATTCCACCCCGGCCAACTCTTGGTCACTTACCTCCGCCACTTCCTTCCTCCACAATGTCACAGAGAACTCCAACTTTGCCTGAGCGGAATACAAAGCCAGCAGATACAAATGAAGAGCTCTATGATGATCATATTGATCGCAAAGATGACATGGTACAAAAATCTGCAGCAGTGCCTGCTGAAGAACTCTATGAAGGAATTCCTGGAGAAGACTATCAGCCAGAGGCCAGCCAAAATACACCTGtgcAAGAAGATCTTTACGAGGACATTGCACCCTTCCAGCAAGGCATTTCAAATGTCCCAACTACCATCCCACCACGACCACCAACTTCAGCACCTCCTCCTATGAATCCAGTTCCATCTTTGCCAGCACAAGGACCAGCTATACCTGAGAGAAGACCCATGCAAGGGACCAAAGATGACCAAGCACCTCCATTACCACCATCCATCCCAAGCAGAGGTGACAGAGGTAAAGAGACAGAAACTGCACCTGTTACAGAAGATAAACCATCTGAGGATGACTTCTCATATGAAAACGTCTACATTGGTAAAGAGACGTACTCTGCGAAGGAAACAGATGAACTTGCTTTTGATCGTGGTGATTTGATTTACATACTCCAAAAGGTTAATACCAATTGGTGGATTGGCTGTATGGACAAGAAAGTGGGTTTGGTTCCAAGTAACCTACTGATTGCAGGCTTTGCTCATTGATGCCATGgtatttgaaacaattttgtgGTATATATTCATAGTTAGATGTATCTGTAATATTTGTATTTAGTATTTTTCGGTCTTTAAGTAGTAGGAATTAATACTGAACTATCAAGAGAATTTAACAGGAATTAAGATATTGTGATTGATCATGTATGGGAAAGATCTCAATCAGATTTACACACTATATAATTAGGGTTCTGGTACAAGACGACTCTAATATCTCAACATAAAAACCTTGATGTTGTTTTCTGAAGTCTTCTACAGCTCGGTTTAAATTGCTTGCACTAaatgtttcaagaaaaaactgGATTATCTTTCATCAGTCATAATACTTTTGATTATGTGTAAGCATTATTTCCCAATGTGGGATCTAGCAAGGGGCATTGTTTTGAATCATTCAATGCCTTTGATTGGGGGAAGGTGCCATGGCAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZYG4	Osteoclast-stimulating factor 1 OS=Xenopus laevis OX=8355 GN=ostf1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004240 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR037781 all species →	Family	SKAP family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15129 all species →	SRC-ASSOCIATED ADAPTOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23471	SKAP2; src kinase-associated phosphoprotein 2	-	Yersinia infection	ko05135	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.