Gene detail

Detailed information of ENSSJYP00000011628.1 in Catostylus mosaicus

Genomic Location: chr14:6941618...6946075
NR annotation: XP_047129265.1, lanC-like protein 3 isoform X3 [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSJYT00000012147

GGACGATTCAACGGCAGCTGAAGAGGTTTCAACGGCACAGAAGGAATATGTACCCGAACTGCTTCAAATTATCCACAAAAATTGCCCTCCACTGCCTGAAAACTGTGAAGGAGCCATGTATGTTGGTGCTGCTGGGATTGGATATGCTTTTTACCATGTCGCTGAATGTCctgtattttcagaaaaaagaaatcaattcTTAGAAATCGCTGAATCATACATCAAGGTGGGGatgaaagaaatcaacaaagtCGACCCCCTTAGGGGTGGCATTGGAGCATCACTTCTTCTTGGTCATGCAGGGATTTACTGTACAGCAATATTGATACATGAAGCATTGGGCCACCAGACAGAAAAAACCGAATATCTTCAAAGCTTTCTAAGCATACAGGCCAACCTGTCTGCAAACTTCTTTGCACCAGGATCAGATGAGTTTTTTGTTGGTAGGGCAGGGTTCCTTGCAGCTTGTTTGATGCTCAACAGGCGTTTCCAAAAGAACATCATCCCAAATGAAGTCACTTTGCAACTGTGCAACTTAACTATTGAATCTGGTAGAATGTATTCCAAGAAATACAACCATCCGAGCCCATTGATGTATTCCTACTATAATTCAGAATATCTagGTGCTGGGCATGGTATGGCTGCAATCCTCTTAGCTCTGCTCAACTTTCCAGAGTGCTATGCTAACAGCCCTCCTGTGGAAAATGACATTAAATCATCAATTGACTACATCCTATCTTGTGAACAAGGAAATGGCAACTACCCACCAGTGCCAGAAGAATGCCGTGATGACTGGAATGAACTAGTGCATTGGTGTCATGGTGCTCCAGGTGTTATCTATGTTCTTGCCAAAGCATTTCTGGTTTGGAAGGATGAACGATACTTATCAGCAGCTTTAAGATGTGGAGAATTGATTTGGAAGAGAGGACTGCTGAAAAAAGGACCAGGAATATGTCATGGTATAGGTGGAAATGGGTATGCTTTTCTTCTCCTTCATCGGCTAACAAGTGATGAGAAGTACCTACACAGGGCAAGGAAGTTTGCTGCATTCATGCAGACAGAAGAATTCAAAGGAAATTCTCGCGTTCCCGATGCACCCTACAGCCTTTACGAAGGTATTGCTGGCACTGCGTGTTTCCTGGCAGATCTTGTTAACCCTGCGGAGGCGATGTTCCCATTTATGGAAGTATTCTGATTGTCTAGCTGTCAGGTGTAAGGTTGCATTCTTGGACAAGTTGAACGTGCTCGCTGCCGATAACTGGCTACAGGCCACGACGAAGCATTCCAAGAACCAAGTTTTTGTGTAGATAGCGTTTGGGACGTATACGGGCTCTGGATAACTGTACAAAACTTTTCTACCGCCCAATAGACAGAGATATAATCCAGCATACCGGATGTTGCTTTGTCGGACGTAGTTTTATCCGACATCTCTCGGGTCGCAAAGCGTCGGGTGTTGAGCTTCCGACTTTTTCGATGCTATAAGTAGTGTCCgacaaaacaacattgaagTATGTTTGATTATGTCTCCGTTTTGCGCCCAAGTTTTTAAAGTATGCGATGCTCGAAATGGTATCAAGGGAAAACTTATAGGCCGTATATCAAACACTGTCTTTGCAACCTATATTTGTTTAGATTTGATTGGTCGGTTTCATTGTCGTTATAGAGATAAGCTAGTGACCTCATGATTCGCCTCTCAGTTAAAATAGCTGGAAATTGGGAttaattttgtgttaaaaaaTACAATCGAAAAGCAACCTGCATAATTTATACCGCAACTTCAAAATACATCTTGGCTAATATTTCCCCATTTTTACAATAAGGAAATATTTGTTGAATTCGTTGAGTAAAACTTTAAACCAAAACTTTACTTCATATCATAGGGTAAAAAGAACTTAGGTCGCAATTTATTATGAAGACTTTGTATATCAATGTATAGTAGacctgttttttaaaaattgaccTCTGTTTACAGCTTTATTTTCGCTTCTATCAAACCTTTTGCCAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y0Y7	LanC-like protein 3 homolog OS=Drosophila melanogaster OX=7227 GN=CG2061 PE=2 SV=1
Q6ZV70	LanC-like protein 3 OS=Homo sapiens OX=9606 GN=LANCL3 PE=1 SV=2
Q8CD19	LanC-like protein 3 OS=Mus musculus OX=10090 GN=Lancl3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001707 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05147 all species →	LANC_like	Lanthionine synthetase C-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007822 all species →	Family	Lanthionine synthetase C-like	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR020464 all species →	Family	LanC-like protein, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12736 all species →	LANC-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031179 all species →	Biological Process	peptide modification	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20484	nisC, spaC, epiC; lantibiotic biosynthesis protein	-	Quorum sensing	ko02024	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catostylus mosaicus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catostylus mosaicus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →