Gene detail

Detailed information of ENSSJYP00000012086.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_048579805.1, 77 kDa echinoderm microtubule-associated protein [Nematostella vectensis]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

ENSSJYT00000012619

ATGCTCAAGTCCCTTTGTAACATAAACCTAGATTGGACAGGCCATTTTCGCTGCGTTGAAGATTCAAGCTCTACAATGATGTCAGATATGCCCAACGAACCGACAAAAGAATATGCTGTAGAAGCAGGGGATGTCAAGAAGACCGAGGAGGAGGAAATGCAATCACCTCGACCCAGATTGTCTTCGCATTCACTGAGTTTATCTGGCTCAAGTGCATTGACTGATTTGATTGCTAAAGCAAGATCTGAATTTAGTCAATCATTACAAGAGGACATGAAAAGATTTGAGAGTCCTCGCTTATCGAATGAAAAGCCGATGAAAGTGATGGATTTGAACGAAAACACGATATACACGGACAAAATGGAGGACGGTGCGGAAAGTCCAAGGACGGCTCGTGCAACCCTGAAGCTTAACTTATCAAATTCATCGCCAAATTCTGCTCTTGGTTCCCCCGGAACAAACAGACGTCTTTCCGGCAATGATTATAAAATGGACATCGGAGGACTGTCACCAAGGCCAAGTGAGCTAATCACGCGATCTTCATCGCCGAGGCTGAGCGAAATAAATGCGATAATAAATGGATCACATGTTAAAGCTGATGATGCCCCCAAAAACGGTGAAAAAGATGACAGAGATGTCAATGGAGGTTACCGAGGCGCATTAGAAGATAAATCTAACACCACGCAACTGCAGCAAAAGTTAAAAGAACAGGATAATGAAATCCTTGTGTTGAAAACGGCACTTGCAAATGTAGTAAGAAGGCTGGAAGCCTTAGAAACAGAACGCAATAAACAAAAAGGCAATGTGTTTGTAAATGGAGgAAAAGGTGGTTTGCCGGCAGCTGCAATTCTGCCATCACAACCAAAAAGCCctcaaaaattcttgaaagatCCTCTTGATGACCCCAAAGATGAGAAAGAGGCTGCTGCGGTTGAAAAGGAGAAAACACCTCAACTGAAAAAACCATTGACTCGAAGAGCCACTGACTACCCAAGAAAGTCTATTCCTGCGCCGTCTGTTAGCTCTCAAGGGCCTCAGGTGTCTGGGAacaatgaaagaagaaaaagtctCTCGAGGCGATCTACTGATGGTCTAAGAAGATCTGGGTCTATAAGcaATCTCTCATCGACAAATAGTGGCGACAGCTCACCAAAGGATGAAATTGTGAAGTTCTACATTCGAGGAAGAGCAGTTAGCACATATCCACCCTCAAATTACATTGATAACAAAAAGAATGGACAAGCACCaagcaaagaaatgaaactagAATGGGTATATGGTTATAGAGGCAGGGACTGtagaaataatttgtttttgctcCCATCTGGTGAAATTGTTTATAATATTGCAGCAGTTGTTGTAATTATGAATCGTGACACAGGGGAACAGAGACATTACCTTGGTCATACTGATGACGTCAAATGCATTGCATTGCACCCAGGTAAAACTATCATTGCTAGTGGACAAGTAGCTGGTCACAGCAAAGAAGACGGGAAGCCCCATGTTCGTATTTGGGATTCAAACACTTTGGAGACACTGCATGTCATTGGAATAGGCTACTTTGAGCGGGCATTGTGTTGCTTAGCATTCTCCACCAAGGATGATGGAAAGCTACTCATTGCAATCGACGAAGCAAATGAACATGTCATATCATTATGGGATTGGCAAAAGAATTCCCGATACTCAGATAACAAGGGCTCAAATGATGCTGTTCTTGGGGTTCTTTTTAATCCAAGTAATACCAACTCATTGGTTTCTTATGGCCGGTCGCATATCGCATTCTGGACCATTACAAACGACATGAAAATTGTCAAGAAAATGGGTATTTTTGAGaAATACGGCAAGCCTAAATTTGTGCTGTCTGCAGCTTTCACCGAGAATGGAGATTTGTTAACTGGAGATTCAAAtggaaatttgtttttttgggGACAAGgaacaaataaaatatcaaaggcTATCAAGGAAGCGCATGATGGTggaatcttttcaatttgttgtATGAGCGATGGAAAAATTCTAACTGGTGGTGGAAAGgacagaaaaatttttgagtGGAATCAGTCTTTTAAGAAAACAGGATTGGAAATTGAGGTACCAGAGAATGCTGGTCAAGTGCGTACGATTGTAGAAGGGCAAATGCAGGATGATGATGACTTAGAAATTATTGTTGGCACCACGAAGAATTGCATCCTAGATGGGACTGTCTCTTCAGGACTGGGGTACATAATGCAGgGGCATGTTGATGAGCTCTGGGGTCTTGGTACACACCCCAATAAAGAACTATTCGTCACTTGTGGATCAGATGAAAGGATGTTTCTTTGGGATGCAGATGGGCACGAGTTTATGTGGTTTAAGCAACTTAAGGAGCCTGCACAATCTGCCGCCTTTCACCCAACTCAGAATGTCATTGCGATTGGTATGAAGTCGGGAAGgTGGCTGGTTGTTGATCTAGAAACATCGGAGGACATTGTCTCATTTCAAGATGGACCTGAACAACACGATGCAATCAAATACTCACCTGACGGAAGTATGATCGCTGTGGGTTCCCATGATAACTTCATTTACTTATATCAAGTTTCGGAAGATGGACGGACGTACAAAAAGGCTGGAAAACTGAGTGGACACTCAAGTTTTGTAACTCATCTCGATTGGTCAAAAGACGGCCAACACTTACAAAGCAATTCAGGGGATTATGAAATCCTTTACTGGCATGCTCCTACGTGTCGCCAAATAGTTTCCGCAGCTTCGATGAGAGACATCGAATGGAACACGTGGACTTGTGTCTTGGGATTCCCGGTTATTGGAATTTGGCCAGAAGGTGCTGATGGTACGGATATAAATGCATGTTGCCGGTCAAGTAACCAGGAGTATCTTGTTACTGGAGATGACTTTGGACAGGtcaatttcttcaattatCCTTCGACGAAACCAAAGGCTGATTGTCATCATTGTGTTGGACACAGTTCCCATGTTACCTGCGTTCGATTCATGTATGATGATGTTAGAATGATATCAGTTGGAGGAAAAGATTGTTCAGTTATGCAGTGGAGGATCTCATAA

Transcript

ENSSJYT00000012619

TATAAGTCATaacaaaaagaagagaaaagcaACTAGCGACATgtttaaaaatgaagatgaagatgattattatgatgacgATCCGTATGATGAAAGAGAGGAGGACATGAGAATTGGCAAGAAAAGGGTACGTTGGGCGGAtttagaagaaagaaaagaactgGAACACAGAAAGAGAATTGGCTTTTGTATTGGTACAGACTGGAGCGTTCTCACTGATCCAAATGCTCAAGTCCCTTTGTAACATAAACCTAGATTGGACAGGCCATTTTCGCTGCGTTGAAGATTCAAGCTCTACAATGATGTCAGATATGCCCAACGAACCGACAAAAGAATATGCTGTAGAAGCAGGGGATGTCAAGAAGACCGAGGAGGAGGAAATGCAATCACCTCGACCCAGATTGTCTTCGCATTCACTGAGTTTATCTGGCTCAAGTGCATTGACTGATTTGATTGCTAAAGCAAGATCTGAATTTAGTCAATCATTACAAGAGGACATGAAAAGATTTGAGAGTCCTCGCTTATCGAATGAAAAGCCGATGAAAGTGATGGATTTGAACGAAAACACGATATACACGGACAAAATGGAGGACGGTGCGGAAAGTCCAAGGACGGCTCGTGCAACCCTGAAGCTTAACTTATCAAATTCATCGCCAAATTCTGCTCTTGGTTCCCCCGGAACAAACAGACGTCTTTCCGGCAATGATTATAAAATGGACATCGGAGGACTGTCACCAAGGCCAAGTGAGCTAATCACGCGATCTTCATCGCCGAGGCTGAGCGAAATAAATGCGATAATAAATGGATCACATGTTAAAGCTGATGATGCCCCCAAAAACGGTGAAAAAGATGACAGAGATGTCAATGGAGGTTACCGAGGCGCATTAGAAGATAAATCTAACACCACGCAACTGCAGCAAAAGTTAAAAGAACAGGATAATGAAATCCTTGTGTTGAAAACGGCACTTGCAAATGTAGTAAGAAGGCTGGAAGCCTTAGAAACAGAACGCAATAAACAAAAAGGCAATGTGTTTGTAAATGGAGgAAAAGGTGGTTTGCCGGCAGCTGCAATTCTGCCATCACAACCAAAAAGCCctcaaaaattcttgaaagatCCTCTTGATGACCCCAAAGATGAGAAAGAGGCTGCTGCGGTTGAAAAGGAGAAAACACCTCAACTGAAAAAACCATTGACTCGAAGAGCCACTGACTACCCAAGAAAGTCTATTCCTGCGCCGTCTGTTAGCTCTCAAGGGCCTCAGGTGTCTGGGAacaatgaaagaagaaaaagtctCTCGAGGCGATCTACTGATGGTCTAAGAAGATCTGGGTCTATAAGcaATCTCTCATCGACAAATAGTGGCGACAGCTCACCAAAGGATGAAATTGTGAAGTTCTACATTCGAGGAAGAGCAGTTAGCACATATCCACCCTCAAATTACATTGATAACAAAAAGAATGGACAAGCACCaagcaaagaaatgaaactagAATGGGTATATGGTTATAGAGGCAGGGACTGtagaaataatttgtttttgctcCCATCTGGTGAAATTGTTTATAATATTGCAGCAGTTGTTGTAATTATGAATCGTGACACAGGGGAACAGAGACATTACCTTGGTCATACTGATGACGTCAAATGCATTGCATTGCACCCAGGTAAAACTATCATTGCTAGTGGACAAGTAGCTGGTCACAGCAAAGAAGACGGGAAGCCCCATGTTCGTATTTGGGATTCAAACACTTTGGAGACACTGCATGTCATTGGAATAGGCTACTTTGAGCGGGCATTGTGTTGCTTAGCATTCTCCACCAAGGATGATGGAAAGCTACTCATTGCAATCGACGAAGCAAATGAACATGTCATATCATTATGGGATTGGCAAAAGAATTCCCGATACTCAGATAACAAGGGCTCAAATGATGCTGTTCTTGGGGTTCTTTTTAATCCAAGTAATACCAACTCATTGGTTTCTTATGGCCGGTCGCATATCGCATTCTGGACCATTACAAACGACATGAAAATTGTCAAGAAAATGGGTATTTTTGAGaAATACGGCAAGCCTAAATTTGTGCTGTCTGCAGCTTTCACCGAGAATGGAGATTTGTTAACTGGAGATTCAAAtggaaatttgtttttttgggGACAAGgaacaaataaaatatcaaaggcTATCAAGGAAGCGCATGATGGTggaatcttttcaatttgttgtATGAGCGATGGAAAAATTCTAACTGGTGGTGGAAAGgacagaaaaatttttgagtGGAATCAGTCTTTTAAGAAAACAGGATTGGAAATTGAGGTACCAGAGAATGCTGGTCAAGTGCGTACGATTGTAGAAGGGCAAATGCAGGATGATGATGACTTAGAAATTATTGTTGGCACCACGAAGAATTGCATCCTAGATGGGACTGTCTCTTCAGGACTGGGGTACATAATGCAGgGGCATGTTGATGAGCTCTGGGGTCTTGGTACACACCCCAATAAAGAACTATTCGTCACTTGTGGATCAGATGAAAGGATGTTTCTTTGGGATGCAGATGGGCACGAGTTTATGTGGTTTAAGCAACTTAAGGAGCCTGCACAATCTGCCGCCTTTCACCCAACTCAGAATGTCATTGCGATTGGTATGAAGTCGGGAAGgTGGCTGGTTGTTGATCTAGAAACATCGGAGGACATTGTCTCATTTCAAGATGGACCTGAACAACACGATGCAATCAAATACTCACCTGACGGAAGTATGATCGCTGTGGGTTCCCATGATAACTTCATTTACTTATATCAAGTTTCGGAAGATGGACGGACGTACAAAAAGGCTGGAAAACTGAGTGGACACTCAAGTTTTGTAACTCATCTCGATTGGTCAAAAGACGGCCAACACTTACAAAGCAATTCAGGGGATTATGAAATCCTTTACTGGCATGCTCCTACGTGTCGCCAAATAGTTTCCGCAGCTTCGATGAGAGACATCGAATGGAACACGTGGACTTGTGTCTTGGGATTCCCGGTTATTGGAATTTGGCCAGAAGGTGCTGATGGTACGGATATAAATGCATGTTGCCGGTCAAGTAACCAGGAGTATCTTGTTACTGGAGATGACTTTGGACAGGtcaatttcttcaattatCCTTCGACGAAACCAAAGGCTGATTGTCATCATTGTGTTGGACACAGTTCCCATGTTACCTGCGTTCGATTCATGTATGATGATGTTAGAATGATATCAGTTGGAGGAAAAGATTGTTCAGTTATGCAGTGGAGGATCTCATAAGCAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q26613	77 kDa echinoderm microtubule-associated protein OS=Strongylocentrotus purpuratus OX=7668 GN=EMAP PE=2 SV=1
Q9Y1C1	77 kDa echinoderm microtubule-associated protein (Fragment) OS=Lytechinus variegatus OX=7654 GN=EMAP PE=2 SV=1
O00423	Echinoderm microtubule-associated protein-like 1 OS=Homo sapiens OX=9606 GN=EML1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001441 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF03451 all species →	HELP	HELP motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR049813 all species →	Domain	Echinoderm microtubule-associated protein-like elp-1, trimerization domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR005108 all species →	Conserved_site	HELP motif	Interproscan
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.