Gene detail

Detailed information of ENSSJYP00000013758.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_002155889.1, endoplasmic reticulum-Golgi intermediate compartment protein 2 [Hydra vulgaris]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000014367

TGAAAATAGTGAAATGATaatacattttatttgtttcgaATAATATGTGTTAATTGAGttattttcatgataaatCGCTGATTTGGAGTTTAGCAGTCTATTTCGTGAAAAGTGGTAAGAGTGTAGATCATGCAGCGGGTAAGCGATTCGCTGAGAAACCGAAAAACGGCTGCAAAAGTCATAAAAGAGTTGGATGCATTTCCCAAAATTCCTCAAGACTACCAGGAAACCAGTGCAAGTGGAGGCACAGTTTCAGTATTTGTCTTTCTGTTCATTGGGATCCTGATGGTATCAGAATTCATGTATTACAGAGCGACAGAAATGAAATATACTTATGAAGTTGATAAAGATGCTGAAAGTAAGATAACAATTAACGTAGACATCacagttgcaatgaaatgtgATGACATTGGAGCTGATGTTCTCGATCTTTCTGGTACCAGCATCGACACTGAGTCCCATTTGAGACTAGAAGAGACATACTTCAGACtagacaaaaaacaaacaaaatggaGGAACCTCATTTACAGGCATCAGTCCGATGGATACAGGACCGTTAATGACGTGTTGGATATGTACGGAACGTCGGGGGGAAAATCGTTGCCGACATATATGCCGCCTAGAGATGATTCAGAATTTACTGGGGAAAGTTTTGATGCTTGTCGCATTTTTGGCGGAATCGATGTCAACAAAGTAGCAGGAAATTTTCACATTACCGCTGGAAAgtCAATTCCTCATCCAAGAGGACATGCTCATCTTAGTGCATTGGTTAATGAAGACATGCAAAACTTCTCACACCGCATTGATCGGCTGTCTTTTGGTTCCCCAATACCTGGAGTCATAAATCCGCTAGATGGCGATATACAATTGAGTAAAAGCAATTATGCAATGTATCAATATTACATAAAgatcgtcccaactaacataaaaacaaACCAAAGGAGTTTGTCAACAAACCAGTTTTCAGTTACTCAAAGGCAAAGAATAATCAATCCAATGGCCAGCACAAGAGGTGTTCCTGgAATTTATTTCAAGTATGATTTTTCATCGCTAATAGTAAGAGTTACAGAAAATGGGCGACCATTTTGGCAGTTTCTTGTTCGTCTATGTGGCATTATTGGTGGCATATTTGCTACATCAGGCATGTTGCATTCTTTTATTGGATTTCTCTTCGATGAAGCTGGCAAACgatattcttttttaaatagcGCACAGCGAAAGTCGCGGCGAAGCTCAAACGATATGGCTGCTTTAAACACCCAAGCTGGAGAAGCATCAATGACCAGTGTGCCTACAAATCCATTACCAGTTACATCGACAAATGGAGGCAGTCAAATGAGCAATGTGCAATTGGTAGAACCTGAAGATTTACCAACGGAAAATGTCGCATGAAGTAACACCCGTATTTGTTGTGAAAGACTTGAAGAAAATAGCTAGAATTTTACTTGTTATTTTGGCCTTTTTAGCGAACAAGATGGGGGCTACTTCAAAAGATCTCTGCTGCACTCCAGGGCTGGATGCGACACCCCAAACAATAAAGGCCAAGCAATGGGAAAATGAAGAGATTACGCTTATTTGTGGAGGACAGGAAGGGAAATCGCCCCCCTGATGTAGGTGACCCCGGTTACTTCTCATATTTAAGTTACTTCTTAAAGAACAACCCCggtttatcatttatcatgGCTCCATTTTATTTCGTGTCTGTCTCTGGTCAATTATTGTGAGTTCTTGCATCAAGAAACCCATTTGACGAAAAGAgtcaaaatttcttctttaaaattgCTAAACCTGTTTTTACATTTCTCTGTTATTTCACCCTCTTTTTCGCCCTCCAAGCAAAAACTGCATTTGATTCTTCAACCGTTTAATTTCGCACTTTTTCATTAGATTGTATATTTTGACTACTCTTAATTTCCCATACTTTCAAGGAAACTCCATTTGCGGTGAAGCTCGTTTTATTCAACCAATTATCCCCATGAGcatacagaaataaaaacaaaaatattcaaagtattgaaaattaaattatctCAAGTACTTAAGAGTATTTTGTGTATTTACTTTAAGTATTAGTGTTGTTCCTACAGGGGGCTTTGGATTTGACAGCCGCCAGGCTATTAATTCGCCAGTCAGCAATTAGTAATAATTTTATGCTTAAGAGTAAGGTTATTTTGTTAAGTTTCATCAAGCCAGATATTATCATATTACTGCCCAATCTTTACTTTTTAGACAATCGGAAAACCTAAATTTCTCAGACTTTCCGGGACCACACCCTTTAGACTTAGGGCAGTTTCATACTCTTCATCCCTCTCTACTTGTATGGAAAGTATGACAGATATTTTCGGGCACCCCCTAGATATTTTTAGGGAAATTATCACTGCACATTTGATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CR89	Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Mus musculus OX=10090 GN=Ergic2 PE=1 SV=1
Q4R5C3	Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Macaca fascicularis OX=9541 GN=ERGIC2 PE=2 SV=1
Q96RQ1	Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Homo sapiens OX=9606 GN=ERGIC2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005733 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13850 all species →	ERGIC_N	Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)	Domain	Interproscan
PF07970 all species →	COPIIcoated_ERV	Endoplasmic reticulum vesicle transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045888 all species →	Family	Endoplasmic reticulum vesicle transporter	Interproscan
IPR039542 all species →	Domain	Endoplasmic reticulum vesicle transporter, N-terminal	Interproscan
IPR012936 all species →	Domain	Endoplasmic reticulum vesicle transporter, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10984 all species →	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030134 all species →	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20366	ERGIC2, ERV41; endoplasmic reticulum-Golgi intermediate compartment protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.