Gene detail

Detailed information of ENSSJYP00000013892.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: XP_002161201.2, fumarate hydratase, mitochondrial [Hydra vulgaris]
Species abbreviation CMOSA · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000014513

AATTGCTCAAAATGGCGGCATGGTTAGCGAATAAACGTGGGTTTAACCTATTGACATCCGTGCAAAGGCAAAGCGCTAAACCATTCAGGCTGGTTTTAAAAAGAGCAATGGCCAGCATAAGGATAGAAACGGATACAATGGGAGAGATGAAAGTGCCATCTGATAAATATTATGGTGCACAAACTGCTAGATCCATGATGAATTTCCCAATtggtgatgaaaatgaaaagatgcctATGGATGTTATAAAAGCATTTGGATACTTGAAAAGAGCTGCTGCTGAAGTGAACATTGAATTTGGCTTGGATTCAAATGTTGctgaaaacatttgcaaagctTGTGATGAGGTAATTAAAGGTGACATTGGAAGAGATCACTTTCCTCTAGTTATTTGGCAGACAGGTTCAGGAACTCAAAGCAATATGAATGTGAATGAAGTTGTTAGCAACCGTGCAATTGAAATGATGGGTGGTGAACTTGGAAGCAAGAAACCAGTCCATCCAAATGACCATGTCAATAAGAGTCAGAGCTCAAATGACACGTTTCCAACTGCCATGCATATTTCTGCAGCTCAAGTTACAAACGATGTATTGCTACCAGGTTTAAAGAAATTGCATGATGCATTGAAAGCCAAAGCAGAAGAATTTCAAGCAATAATCAAAATTGGCAGAACCCATACGCAGGATGCAACACCACTAACCCTTGGCCAGGAATTCTCTGGCTACGTTACACAAATCGAATATGGAATATCAAGAATTGAAGCAACATTACCAAGGGTTTACCAATTAGCAATTGGAGGCACAGCAGTTGGAACAGGCTTAAATACAAGAATTggatttgctgaaaaaatgtCAGCTAAAATAGCCGACCTCACTGGTATTCCATTTGTTAGCGCGCCAAACAAGTTTGAGTCGCTAGCAGCACATGATGCATTGGTTGAATTAAGTGGTGCCATGAATGTTGTTGCAAGCAGCattatgaaaattgcaaatgatctacGATTGCTTGGATCAGGACCAAGGTGTGGTTTGGGTGAATTGCTCTTACCTGAAAATGAACCAGGTAGCAGCATCATGCCAGGGAAAGTGAATCCTACCCAATGTGAGGCTATTACAATGGTAGCTGCACAAGTCATGGGAAATAATGTTGCCGTTACAATTGGTGGAAGTAATggacattttgaattgaattgttttaaaCCGTTGATCATCAAAAATGTATTGCAATCAGCAAGATTGCTTGGTGATGCAAGTGCCACATTTGCAGACCATTGTGTATCTGGAATTATTGCCAATGAGGAGAGAATTGGCAAACTGTTGAATGAATCATTGATGTTGGTAACTGCATTGAATCCACACATTGGATACGATAATGCTGCTAAGATTGCAAAAACTGCTCATAAAGATGGATCAACTTTATTAGAGGCTGCTTTGAAGTTAGAGCTTCTAACTGAAGACCAGTTTAAAGAATGGGTCAAGCCTGAGAATATGTTAGGCCCAAAGTGATCTCTAGCTGGTGCTGAAGACTAAATTACTTTTGAATGTGCAAAGATACATCATAAATCACATGCTGAAGTCATGCTGCCCAAGCTGTTAAGTGCTTTGTTGAATGCTAAATAATAATTGTTTTCTTAACCATCGAAACGCTGTACAATAAATTCATTCGTCCAAATGTTTGAGAGATTTCGAGGATTGTTATCCACTTTTATTCGCTGAAATACTTTTTTGATATGCTTTTTTGGGATTTTTAATAATCTGTGTTCTACTATCTAATCTAACCCAATTTTCATCCTTTAAGCGCAAAGCGTCCGTTCTTTGTTAAATGTAGACACTTGCGATTACGAGTTGATTCTACTAAAAATCAGCGATgctcatttgattttttttctacCCATGGAAGCATATATTTGCGTAAGAATGTTATTATGGTTTGGTTggatattttgtaaaaatgaagCGGaacaaacaatttcaaatgattgttttcaattcaCTTTCAAATAAAGACACGAGCAAATAAATAAGCTATCATCACACATTGAAATGGCGTACTCCTTGCCAAATATGGACTTACCTCGAAAAATAGACGGTGGCTTTCTCAACTAGGGGTCATTTGAAGGCGgagtttaaagcaattttagtTGCAAAAGTCAAACCTGTACATGTAACTAATTTAAATttacttcattcattcaattgaaCTGACAATGATCAAGAGTTGGAGAAAAGAATTGAGACTAAGAtgacttttcttttttcagatACTATACTACAATGTTAACTTAAAACACGAAGAACGAACTTAAATACGGTGCATATATCCCCTATAGATGATATAAGTGGTACAGATTACAAAATAAAGATGTTTTTGATCCtgcaaaaatacttttaaatgCTTTCATATACTTTAATTAATTGTACAGATACAGAGTCATGGTTATTAAAAGAAACTAAGATGCGAGGTGACCTAGAAGATAGTGGTTGGACTCGAGACTCGAAAACACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14408	Fumarate hydratase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Fh PE=1 SV=2
P97807	Fumarate hydratase, mitochondrial OS=Mus musculus OX=10090 GN=Fh PE=1 SV=3
Q60HF9	Fumarate hydratase, mitochondrial OS=Macaca fascicularis OX=9541 GN=FH PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003360 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00206 all species →	Lyase_1	Lyase	Domain	Interproscan
PF10415 all species →	FumaraseC_C	Fumarase C C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020557 all species →	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR005677 all species →	Family	Fumarate hydratase, class II	Interproscan
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR000362 all species →	Family	Fumarate lyase family	Interproscan
IPR022761 all species →	Domain	Fumarate lyase, N-terminal	Interproscan
IPR018951 all species →	Domain	Fumarase C, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11444 all species →	ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004333 all species →	Molecular Function	fumarate hydratase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006106 all species →	Biological Process	fumarate metabolic process	Interproscan
GO:0006108 all species →	Biological Process	malate metabolic process	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01679	E4.2.1.2B, fumC, FH; fumarate hydratase, class II	EC:4.2.1.2	Cushing syndrome	ko04934	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.