Gene detail

Detailed information of ENSSJYP00000014346.1 in Catostylus mosaicus

Genomic Location: not available for this species
NR annotation: EDO32430.1, predicted protein [Nematostella vectensis]
Species Catostylus mosaicus · all data for this species · gene families

Sequence

CDS

Transcript

ENSSJYT00000014991

CAGGGGTATCACTGGAACAGGCCACTTGATGTTAACCGTTGGTAGATCAAGGGTTGGGAAGATTGTACGTTTACTTAAAAGAGGCacgaaaaaagaaaaggtcTTTTTAGATTTCAAGAAAAGAAGGGACGCAGTGATCATTAGGAATCTGAGATCAACCGTCGAAGGAAACGGAATGGGCTCATTAGATAAGGGCAATGATGACGACAAAATGTCTGTCgataacaaaatattgttgatCACTAAAAATTTGCAGGAAGTTATTGGTATGGAGAGAATAAAGCCAATATTAGAGCAAAGAAATCTGAGGCTGTATTGGGGAACAGCAACAACTGGCAAACCACACATCGCATATTTTGttccaatgacaaaaattGCAGATTTTCTACATGCTGGTTGTGAGGTTACTGTCCTTTTTGCTGACCTTCATGCATACTTAGATAATTTGAAGGCTCCTTGGGAGTTGCTTGAATATCGAGTGAAATATTATCAAGAGGTTATAAAGTCCATGTTGGAATCAATTGATGTCCCGCTGGAAAAGTTGAAGTTTGTAAAGGGTACAGACTACCAGCTCAGTAGGGAGTATATTCTCGATGTTTTCAAGATGACAACTGTCGCCACAGAGCATGACTGTAAGAAAGCTGGATCAGAGGTTGTAAAGCAAGTTCAACACCCGGTACTTAGTGGCCTGTTATACCCTGGTTTACAGGCATTAGATGAAGAGTACTTAAATGTGGATGCTCAGTTTGGAGGAGTGgaccaaagaaaaatatttacatttgcGGAAAAGtataTGCCACAGCTTGGATATCAAAAACGGATCCATCTGATGAACCCGATGGTTCCAGGACTTACGGGAGCAAAAATGAGTGCATCGGAAGAGGATTCTAAGATCGACTTACTGGACAGTGCGGCCACAGTAAAGAAGAAGATTGGCAAGGCGTTTTGTGAAGAAGGGAACATATCTGAAAATGGTGTTTTAGCATTTTGCAAGTTTGTTGTGTTTCCAGTTTTGGAGCTGAAAGAAGGAAGTGAAGGGTTCTTGGTGGAACGTGATGACGCAAATGGTGGAAACatctattttgcaaattatcagTCATTGGAAGAAACATTTGGGAAAAAGGAACTTCATCCtttagatttgaaaaatggtctgTCAAAATTCATGAATAAATTGTTAGATCCCATTCGGAGGAAgtttgatgaaaagaaaatgaaagaattggCAAATAATGCATACCCCAAAGCCGATAAAAAGACAAAATCAAAAGGAGAAACACGAGAGATAAACCCTTCGCGGCTTGATTTAAGAGTTGGAAGAATTAACTCAGTTAAGAAGCATCCAGAAGCCGACACGCTTTACATCGAAGAAGTTGACATTGGTGAAGAATGCCCAAGAACAGTAGTAAGCGGGCTAGTCGAGTATATATCAGAGGATGAGCTAAATGGGAGGTTGGTTGTTTTGGTTTGCAACATGAAACCAGTCAATATGAGAGGTGTGAAATCAGAAGCCATGTTATTAGCGGCATCAAAGACTGAGATGGATGGAAAGAGAGTTGTGAAGCCTTTGGAACCACCTACTGATTCAGAGACGGGTGATCGAGTCTGGTTTGAAGGATATGAACATGATAGATGTGGAGaaCCGGATGAGACATTAAATCCAAAAAAGAAGATCTTCGAAACAATTAAGGTGGATATGGCAGTCTCTGATGAAGAAGTTGCTGAGTATAAAGGATGTGCTATGAAGACAAAGAGGGGTGTTGTGCAAGCAACATTAAGGAACGCAACCATTGGATAGATCTGTAATCAAATTATGATCAGTTTAGAAAATAGATAGtaattgacaataaatatattttttgttgtgtTGTCTCGCCTTCTCCTGACGTTGGATCTTTGCAGTCATTACTGACACTCTTCGAGCCCCACAATTTCTATAGAATTGTCATTGACTAGTTTTCTCAGCTTCATCTGCCATTTAGAAGCCGCCAGACGTTGTTGACATTTGAAGACTGCCTGTCGAAAAAGTGGAAACGTTTCAAAGTCTCGCGGCTTCAATTACAAAgttaatgatgataaatcGTAACAACTTGGGACTCTTAAGATATCTTCTAATTACGTTGTAtgagaaaaaacaataaagatTGAGTAACATGTATTCTGCTAACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DIJ1	Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis OX=8364 GN=yars1 PE=2 SV=1
Q6TGS6	Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio OX=7955 GN=yars1 PE=2 SV=2
Q7ZX51	Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis OX=8355 GN=yars1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01588 all species →	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002307 all species →	Family	Tyrosine-tRNA ligase	Interproscan
IPR002547 all species →	Domain	tRNA-binding domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR051270 all species →	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11586 all species →	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004831 all species →	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006437 all species →	Biological Process	tyrosyl-tRNA aminoacylation	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000014346.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.