Gene detail

Detailed information of ENSSJYP00000014569.1 in Catostylus mosaicus

Genomic Location: chr4:3028990...3034938
NR annotation: XP_047132857.1, amino acid transporter AVT1D [Hydra vulgaris]
Species Catostylus mosaicus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSSJYT00000015234

GATATGCCAGTATGCACTCAGTGGCTGATAACAACAGAGATGTCATATTCATGCGATATTTTGTTTGGGGTGTGTTTGGCACACCGGCCTAGTTTTGTGTTGGGAAGCGTCTGAGAAGAGAATTCCAGATATTACGTCTGCAACAAGTCCAGTTTCAAAGTCTTAAGAGCATATACttaataatcaatttatttgatgTTAATTCGAAAACGATGTCACGCAACGGGATGGTTCAAGATGAAGATGAGACGGGGGTATCCAGCTTTAAATTGCAGGAGAAAAGCAGACACAGTTATAATGaaaatGACCCTATTTTGCTGGATAAAGACGTAAACGCCAAGGAAGTGACGAACAATGATCAAGtgacaaacaaaaattatgttcaTCTTCCCACGCATGGCTTATCAGTACTGACCTGTGCCCTTTTCATCGTTGGAGAAATGGCAAGTGGCGGAATATTGGCACTGCCAAGAGCACTTGTCAATGCAGACTATTCTGgaattattttgatgattgcTTGTGCATTTGCAGCACTATATTGTGGTGTGTTGATCGGCAAATGCTGGATGCAATTGCGCAGCAGAGCAGATATGGAGGAGGCATTCCCTCGAGACCCTTATCCAACCATTGGGTATGAGTGTTATGGACGCGCAGGTAGAGCTGTTGTTGAGTTTTGCCTCTTGACAACCCTTATTGGTGCCGGTATCGTCTTTCTGATCGTTTCTGCACAAAACATTGCAAGCATAGTTGACAAGAAGATTGGCTCTTTTGAATCCCCCGAAGCTGAGGCTAGAGCATGGGTCTTAATCATCAGCGCATTTGTTTTACCTTGCACTTATTTAGGAACACCGAAAGATATTTGGCCATTTGCTGTCTTGGCCACAGTTTCCACGTCTACTGCATGTATTCTCATCGTTGTGAAATGCATAATAGATTGGCCTGGTGATTTTGACAAAGTACCAAAGTTTGAAGTAACTGTAGAGTCGTTTTTTAGAGCGTTCGGAACAATAGCGTTTGCATTTGGCGGTACGTCACTCTTCCCATCCTACCAGGCAGATATGAAAAAGCCAGAGAAGTTCACGAAATCTGCGGTTTCAGCATTTGTAGTTATTCTTACGATATACATTCCAACAGGTATTTTGCCATTCTTGGTCTATGGTGCAaagaatgatgataatattcTCCAAACTGTCAAGCATCAAGGAGGCATTGGTCCTGAACAGAGTATAGCAATTGCTGCAGAAGTTTTCGTATCTCTACAtctattgtttgcattaataatCGTTTTAAACCCAGCCTTCCAACAAATAGAAGAATACCTGAAACTGCCTAATCATTTTGGTTGGAAAAGATGTATGTGTCGCACtgtaatttttctatttgtacTTGGTGTAGCAGTAGCTGTTCCAAAGTTTGGTGTGATTTTGTCGCTTGTTGGTGGCTCAACTATTACGATGATGACTTATGTCCTTCCTTGCGTGTTCTACTGGAAATTGAATCCAGGCCTGCCGCTTTACGTCAAAATCCTCCTAACAGAGATCATCTTCATATCGATTTGCAGCGGTGGTGCATCAACCTATTCCGCCGTCTTAGAACTGAAGCAAACCTTTCTGAGTTATTAAACATAGTTAATAACGATAGATGATTAGCTTTATTATTATCTATATCAATTAGTATTTTGCTTAGAATTGATAGAACGTTGTAATTTTATGCTCTTTTAACTCGCTTTTGTAGAagaatttatataaaaatgaagCCCTCGTTCACTATTTGGGATCCTGGAATATGCATCAATTCTCACCTGTGATAGGATAACTTCATCTCTAGATATTAGGGGCAATTCTTCGCTCCATCATTGATACACTTATAGTTACGATAACTTTATAGTCATGAGGGGCGAGGGGGGCTGTTTGACTTGAAAGACAAGGTGATTTTGGAGGGCCGATTTCTCAAACCCCTAAACATGTTGACGAAAATTTTTCTAGTCAAGACCTAGCCATTTATgatcatcatttttttcattcattaatttgacAAGAAGTAGGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F4JE35	Amino acid transporter AVT1B OS=Arabidopsis thaliana OX=3702 GN=AVT1B PE=3 SV=2
F4IUW3	Amino acid transporter AVT1C OS=Arabidopsis thaliana OX=3702 GN=AVT1C PE=1 SV=1
Q9LXF8	Amino acid transporter AVT1J OS=Arabidopsis thaliana OX=3702 GN=AVT1J PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002079 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490 all species →	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057 all species →	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48017 all species →	OS05G0424000 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003333 all species →	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSSJYP00000014569.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.